View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18132_low_20 (Length: 338)

Name: NF18132_low_20
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18132_low_20
NF18132_low_20
[»] chr4 (8 HSPs)
chr4 (20-327)||(30922249-30922556)
chr4 (20-80)||(36752376-36752436)
chr4 (28-85)||(579301-579358)
chr4 (28-73)||(17358070-17358115)
chr4 (28-73)||(21172903-21172948)
chr4 (28-73)||(24550837-24550882)
chr4 (28-73)||(31435977-31436022)
chr4 (28-73)||(37166162-37166207)
[»] chr8 (10 HSPs)
chr8 (27-85)||(31291230-31291289)
chr8 (22-85)||(36482109-36482172)
chr8 (25-73)||(45406347-45406395)
chr8 (21-80)||(38216807-38216866)
chr8 (28-74)||(30089982-30090028)
chr8 (20-74)||(31941085-31941139)
chr8 (28-73)||(7772109-7772154)
chr8 (28-73)||(25213653-25213698)
chr8 (28-73)||(27817508-27817553)
chr8 (24-73)||(33067443-33067492)
[»] chr5 (4 HSPs)
chr5 (20-85)||(35232555-35232620)
chr5 (20-73)||(671110-671163)
chr5 (28-73)||(10165556-10165601)
chr5 (24-80)||(2025736-2025792)
[»] chr3 (4 HSPs)
chr3 (28-100)||(24751752-24751822)
chr3 (20-85)||(40559686-40559751)
chr3 (40-85)||(42482998-42483043)
chr3 (25-73)||(48191118-48191166)
[»] chr1 (9 HSPs)
chr1 (20-85)||(15104056-15104121)
chr1 (24-100)||(39787705-39787779)
chr1 (20-80)||(45788640-45788700)
chr1 (29-102)||(26261353-26261424)
chr1 (20-85)||(5790070-5790135)
chr1 (20-73)||(29511132-29511185)
chr1 (20-73)||(42631036-42631089)
chr1 (28-100)||(49500860-49500930)
chr1 (28-80)||(18089827-18089879)
[»] scaffold0036 (1 HSPs)
scaffold0036 (20-66)||(51653-51699)
[»] chr2 (8 HSPs)
chr2 (28-74)||(18251397-18251443)
chr2 (19-85)||(35687836-35687902)
chr2 (24-85)||(727344-727405)
chr2 (28-100)||(4014872-4014942)
chr2 (20-73)||(8859338-8859391)
chr2 (28-85)||(34242510-34242567)
chr2 (28-73)||(38140715-38140760)
chr2 (28-73)||(42160316-42160361)
[»] scaffold0457 (1 HSPs)
scaffold0457 (24-73)||(6803-6852)
[»] scaffold0244 (1 HSPs)
scaffold0244 (20-73)||(7808-7861)
[»] scaffold0242 (2 HSPs)
scaffold0242 (28-85)||(15070-15127)
scaffold0242 (28-85)||(23905-23962)
[»] chr7 (1 HSPs)
chr7 (20-73)||(45236954-45237007)
[»] chr6 (2 HSPs)
chr6 (40-73)||(10673270-10673303)
chr6 (28-73)||(15953258-15953303)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 20 - 327
Target Start/End: Complemental strand, 30922556 - 30922249
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagctctaggacttgtggatgttcttcctttaattgttg 119  Q
    ||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  30922556 gtatcggggttcgaactcctatcatgacattcggcataacaatttcgacattttttcaattaagctctaggacttgtggatgttcctcctttaattgttg 30922457  T
Q  120 cataatcttctcataatttgatttctaattatagaatcattatcttcctaaagtctcattatgatcaataaaggacatgacatgaaagcaaattgatttg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30922456 cataatcttctcataatttgatttctaattatagaatcattatcttcctaaagtctcattatgatcaataaaggacatgacatgaaagcaaattgatttg 30922357  T
Q  220 tagtactgtagcttattggctactttaatttatgcatcatattaatttggaccctaattaaagtaaatctttcttgtggacaatccacgtagttgcgagg 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  30922356 tagtactgtagcttattggctactttaatttatgcatcatattaatttggaccctaattaaagtaaatctttcttgtggacaatccacgtaattgcgagg 30922257  T
Q  320 ctattcat 327  Q
    ||||||||    
T  30922256 ctattcat 30922249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 36752436 - 36752376
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagtt 80  Q
    ||||||| ||||||||||| ||||||||||  ||  |||||||||||||||||| ||||||    
T  36752436 gtatcggggttcgaaccccgatcatgacatctggcctaacaatttcggcattttgtcagtt 36752376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 579301 - 579358
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||||||| |||||||||| |||  ||||||||||| |||||| |||||| ||||    
T  579301 gttcgaaccccgatcatgacatccggcctaacaatttcgacattttatcagttgagct 579358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 17358115 - 17358070
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||||||| |||| |||||||||| |||||||    
T  17358115 gttcgaaccccgatcatgacatccggtctaacaatttcagcatttt 17358070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 21172948 - 21172903
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| ||||| |||| |||| ||||||||||||||||||    
T  21172948 gttcgaaccccaatcataacatccggtttaacaatttcggcatttt 21172903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 24550882 - 24550837
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||    
T  24550882 gttcgaaccccgatcatgacatccggcctaacaatttcggcatttt 24550837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 31435977 - 31436022
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||    
T  31435977 gttcgaaccccaatcatgacatccggcctaacaatttcggcatttt 31436022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 37166207 - 37166162
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||    
T  37166207 gttcgaaccccgatcatgacatccggcctaacaatttcggcatttt 37166162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 31291289 - 31291230
Alignment:
Q  27 agttcgaacccctatcatgacattcggtataacaatttcggcattttt-tcagttaagct 85  Q
    |||||||||||| |||||||| |||||  ||||||||||||||||||| |||||||||||    
T  31291289 agttcgaaccccgatcatgacgttcggcctaacaatttcggcatttttgtcagttaagct 31291230  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 36482109 - 36482172
Alignment:
Q  22 atcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||||||||||||| |||||  |||||||  ||||||||||| |||||| |||||||||||    
T  36482109 atcggagttcgaaccccgatcatagcattcggcctaacaatttcgacattttatcagttaagct 36482172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 45406395 - 45406347
Alignment:
Q  25 ggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    |||||||||||||| |||||||||| |||  ||||||||||||||||||    
T  45406395 ggagttcgaaccccgatcatgacatccggcctaacaatttcggcatttt 45406347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 38216807 - 38216866
Alignment:
Q  21 tatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagtt 80  Q
    |||||||||| |||||||  |||||||||  ||  |||||||||||||||||||||||||    
T  38216807 tatcggagtttgaaccccggtcatgacatctggcctaacaatttcggcattttttcagtt 38216866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 30090028 - 30089982
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttt 74  Q
    ||||||||||| |||||| |||||||  |||||||||||||||||||    
T  30090028 gttcgaaccccgatcatggcattcgggctaacaatttcggcattttt 30089982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 31941085 - 31941139
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttt 74  Q
    ||||||| ||||||||||| |||||||||| | |  |||||||||||||||||||    
T  31941085 gtatcggggttcgaaccccgatcatgacatccagcctaacaatttcggcattttt 31941139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 7772109 - 7772154
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||    
T  7772109 gttcgaaccccgatcatgacatccggcctaacaatttcggcatttt 7772154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 25213698 - 25213653
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||| ||| |||| ||||||||||||||||||    
T  25213698 gttcgaaccccgatcatggcatccggtctaacaatttcggcatttt 25213653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 27817508 - 27817553
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    |||||||||||  ||||||||| |||| ||||||||||||||||||    
T  27817508 gttcgaaccccggtcatgacatccggtctaacaatttcggcatttt 27817553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 33067443 - 33067492
Alignment:
Q  24 cggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||||||| |||||| ||| |||  ||||||||||||||||||    
T  33067443 cggagttcgaaccccgatcatggcatccggcctaacaatttcggcatttt 33067492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 35232620 - 35232555
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||| || |||||||| ||||||||||||| | ||||||||||| ||||||  ||||||||||    
T  35232620 gtatcggggtccgaaccccaatcatgacattcgatctaacaatttcgtcattttaccagttaagct 35232555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 671110 - 671163
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||| ||||||||||| |||||||||| ||   ||||||||||||||||||    
T  671110 gtatcggggttcgaaccccgatcatgacatccgacctaacaatttcggcatttt 671163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 10165601 - 10165556
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||| ||| |||| ||||||||||||||||||    
T  10165601 gttcgaaccccgatcatggcatccggtctaacaatttcggcatttt 10165556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 2025736 - 2025792
Alignment:
Q  24 cggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagtt 80  Q
    ||||||||||||||| |||||||||| ||   |||||||||| ||||||| ||||||    
T  2025736 cggagttcgaaccccgatcatgacatccgacctaacaatttccgcattttatcagtt 2025792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 24751822 - 24751752
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagctctaggacttgtggat 100  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||  ||||| ||  |||||||||||||||    
T  24751822 gttcgaaccccgatcatgacatccggcctaacaatttcggcattttgccagttgag--ctaggacttgtggat 24751752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 40559751 - 40559686
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||||||||||||||| |||| | ||| ||   |||||||||||||||||| |||||| ||||    
T  40559751 gtatcggagttcgaaccccgatcaaggcatccgacctaacaatttcggcattttatcagttgagct 40559686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 42482998 - 42483043
Alignment:
Q  40 atcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    |||||||||| |||| |||||||||||||||||| |||||| ||||    
T  42482998 atcatgacatccggtctaacaatttcggcattttctcagttgagct 42483043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 48191166 - 48191118
Alignment:
Q  25 ggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||||||  ||||||||| |||  ||||||||||||||||||    
T  48191166 ggagttcgaaccccggtcatgacatccggcctaacaatttcggcatttt 48191118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 15104121 - 15104056
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||| ||||||||||| |||||||||| |||  ||||||||| |||||||| |||||| ||||    
T  15104121 gtatcggggttcgaaccccgatcatgacatccggcctaacaattttggcattttgtcagttgagct 15104056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 39787705 - 39787779
Alignment:
Q  24 cggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagctctaggacttgtggat 100  Q
    |||||||||||||||  ||||| |||||||| ||||||||||| ||||||  ||||| ||  |||||||||||||||    
T  39787705 cggagttcgaaccccggtcatggcattcggtctaacaatttcgacattttaccagttgag--ctaggacttgtggat 39787779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 45788700 - 45788640
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagtt 80  Q
    ||||||| ||||||||||| |||||| |||||||  |||||||||||| ||||| ||||||    
T  45788700 gtatcggggttcgaaccccgatcatggcattcggcttaacaatttcggtattttatcagtt 45788640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 26261353 - 26261424
Alignment:
Q  29 ttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagctctaggacttgtggatgt 102  Q
    |||||||||| ||||||  || |||  ||||||||||||||||||| ||||| ||  |||||||||||||||||    
T  26261353 ttcgaaccccgatcatggtatccggcctaacaatttcggcatttttccagttgag--ctaggacttgtggatgt 26261424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 5790135 - 5790070
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    |||||||  ||||||||||  ||||||||| |||  ||||||||||||||||||  ||||||||||    
T  5790135 gtatcgggattcgaaccccggtcatgacatccggcctaacaatttcggcattttgccagttaagct 5790070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 29511185 - 29511132
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||| |||||||||||  |||||||||||||  ||||||||||| ||||||    
T  29511185 gtatcggggttcgaaccccggtcatgacattcggcctaacaatttcgtcatttt 29511132  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 42631036 - 42631089
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||| ||||||||||| |||||| ||| |||  ||||||||||||||||||    
T  42631036 gtatcggggttcgaaccccgatcatggcatccggcctaacaatttcggcatttt 42631089  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 49500930 - 49500860
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagctctaggacttgtggat 100  Q
    ||||||||| | |||||||||| |||  ||||||||||||||||||  ||||| ||  |||||||||||||||    
T  49500930 gttcgaacctcgatcatgacatccggcctaacaatttcggcattttgccagttgag--ctaggacttgtggat 49500860  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 18089827 - 18089879
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttttcagtt 80  Q
    |||||||||||  ||||||||| |||  |||||||||||||||||| ||||||    
T  18089827 gttcgaaccccggtcatgacatccggcctaacaatttcggcattttgtcagtt 18089879  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 51699 - 51653
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcg 66  Q
    ||||||||||||||||| | ||||| |||| ||||||||||||||||    
T  51699 gtatcggagttcgaacctcgatcataacatccggtataacaatttcg 51653  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 74
Target Start/End: Complemental strand, 18251443 - 18251397
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttt 74  Q
    ||||||||||| |||||| |||||||| ||||||||| |||||||||    
T  18251443 gttcgaaccccgatcatggcattcggtctaacaattttggcattttt 18251397  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 35687836 - 35687902
Alignment:
Q  19 agtatcggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    |||| ||||||||||| ||| |||||| ||| |||  |||||||||||||||||| |||||| ||||    
T  35687836 agtaccggagttcgaatcccgatcatggcatccggcctaacaatttcggcattttatcagttgagct 35687902  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 727344 - 727405
Alignment:
Q  24 cggagttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||||||||||| |||||| ||| ||   |||||||||||||||||| |||||| ||||    
T  727344 cggagttcgaaccccgatcatggcatccgacctaacaatttcggcattttgtcagttgagct 727405  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 4014872 - 4014942
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagctctaggacttgtggat 100  Q
    |||||||||||  |||||| || |||  |||||||||||||||||| |||||| ||  |||||||||||||||    
T  4014872 gttcgaaccccggtcatgagatccggcctaacaatttcggcattttgtcagttgag--ctaggacttgtggat 4014942  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 8859338 - 8859391
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||| ||||||||||| |||||||||| |||  ||||||||||| ||||||    
T  8859338 gtatcggggttcgaaccccaatcatgacatccggcctaacaatttcgacatttt 8859391  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 34242510 - 34242567
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||||||| ||||||| || |||  |||||||||||||||||| |||||| ||||    
T  34242510 gttcgaaccccgatcatgatatccggcctaacaatttcggcattttatcagttgagct 34242567  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 38140760 - 38140715
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||    
T  38140760 gttcgaaccccgatcatgacatccggcttaacaatttcggcatttt 38140715  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 42160316 - 42160361
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||| |||||||||| |||  ||||||||||||||||||    
T  42160316 gttcgaaccccgatcatgacatccggcctaacaatttcggcatttt 42160361  T

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Target: scaffold0457 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 6852 - 6803
Alignment:
Q  24 cggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    |||||||||||||||  ||||||||| |||  ||||||||||||||||||    
T  6852 cggagttcgaaccccggtcatgacatccggcctaacaatttcggcatttt 6803  T

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Target: scaffold0244 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 7808 - 7861
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||| |||||||||||  ||||||||| || | ||||||||||||||||||    
T  7808 gtatcggggttcgaaccccggtcatgacatccgatctaacaatttcggcatttt 7861  T

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Target: scaffold0242 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 15127 - 15070
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||||| |  |||||||||||||  |||||||||||||||||| |||||| ||||    
T  15127 gttcgaacctcggtcatgacattcggcctaacaatttcggcattttatcagttgagct 15070  T

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Target: scaffold0242; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 23962 - 23905
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcattttttcagttaagct 85  Q
    ||||||||| |  |||||||||||||  |||||||||||||||||| |||||| ||||    
T  23962 gttcgaacctcggtcatgacattcggcctaacaatttcggcattttatcagttgagct 23905  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Complemental strand, 45237007 - 45236954
Alignment:
Q  20 gtatcggagttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||| |||||||||||  ||||||||| |||  ||||||||||||||||||    
T  45237007 gtatcggggttcgaaccccggtcatgacatccggcctaacaatttcggcatttt 45236954  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 10673303 - 10673270
Alignment:
Q  40 atcatgacattcggtataacaatttcggcatttt 73  Q
    ||||||||||||||| ||||||||||||||||||    
T  10673303 atcatgacattcggtctaacaatttcggcatttt 10673270  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 15953303 - 15953258
Alignment:
Q  28 gttcgaacccctatcatgacattcggtataacaatttcggcatttt 73  Q
    |||||||||||  |||| ||||||||| ||||||||||||||||||    
T  15953303 gttcgaaccccggtcattacattcggtctaacaatttcggcatttt 15953258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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