View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18132_low_24 (Length: 269)

Name: NF18132_low_24
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18132_low_24
NF18132_low_24
[»] chr6 (5 HSPs)
chr6 (1-253)||(341822-342074)
chr6 (2-251)||(337785-338034)
chr6 (2-183)||(377539-377720)
chr6 (38-187)||(346778-346927)
chr6 (38-187)||(355437-355586)
[»] chr7 (3 HSPs)
chr7 (38-156)||(12164242-12164360)
chr7 (38-156)||(12175767-12175885)
chr7 (29-69)||(1033937-1033977)
[»] chr4 (1 HSPs)
chr4 (35-156)||(3321649-3321770)
[»] chr8 (1 HSPs)
chr8 (38-156)||(36668094-36668212)
[»] chr1 (4 HSPs)
chr1 (4-66)||(12963946-12964008)
chr1 (5-91)||(30368180-30368266)
chr1 (41-69)||(13891606-13891634)
chr1 (29-69)||(13895945-13895985)


Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 341822 - 342074
Alignment:
Q  1 gttttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341822 gttttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtt 341921  T
Q  101 tatgcgccgtcttacaagttctttagttttaatgctggacctaggacttgtttgggaagagagttggctttcattcaagttaagatggttgctgcttctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  341922 tatgcgccgtcttacaagttctttagttttaatgctggacctaggacttgtttgggaagagagttggctttcattcaagttaagatggttgctgcttctg 342021  T
Q  201 ttttgtggaactattgtgtccatgttgtggaagatcatcaagtcactcctaac 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  342022 ttttgtggaactattgtgtccatgttgtggaagatcatcaagtcactcctaac 342074  T

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Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 2 - 251
Target Start/End: Original strand, 337785 - 338034
Alignment:
Q  2 ttttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgttt 101  Q
    |||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  337785 ttttctttgtattcaatgggaagggatgcaaatatttggggagaagattgcttggagttcaagccagagaggtggatttctgagagaggaggcattgttt 337884  T
Q  102 atgcgccgtcttacaagttctttagttttaatgctggacctaggacttgtttgggaagagagttggctttcattcaagttaagatggttgctgcttctgt 201  Q
    |||| || |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |    
T  337885 atgcaccatcttacaaattctttagttttaatgctggaccaaggacttgtttgggaagagagttggctttgattcaagttaagatgattgctgcttctat 337984  T
Q  202 tttgtggaactattgtgtccatgttgtggaagatcatcaagtcactccta 251  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  337985 tttgtggaactattgtgtccatgttgtgggagatcatcaagttactccta 338034  T

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Target: chr6; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 377539 - 377720
Alignment:
Q  2 ttttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgttt 101  Q
    |||||||||||| ||||||| ||   |||| | || |||||| |||||||||||||||| ||||||||||| ||||| |||||||||||  ||||||||     
T  377539 ttttctttgtattcaatggggagatttgaagagatatggggagaagattgcttggagttcaagccagagagatggatatctgagagaggtagcattgttc 377638  T
Q  102 atgcgccgtcttacaagttctttagttttaatgctggacctaggacttgtttgggaagagagttggctttcattcaagttaa 183  Q
    |||  |||||||| |||||||||||||||||||||||||| ||||||||||||||||  || ||| | ||||||||||||||    
T  377639 atgaaccgtcttataagttctttagttttaatgctggaccaaggacttgtttgggaaaggacttgtccttcattcaagttaa 377720  T

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Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 346927 - 346778
Alignment:
Q  38 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 137  Q
    |||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| || | || |||||||||||  |||||| ||||||||    
T  346927 tggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtttattagttataatgctg 346828  T
Q  138 gacctaggacttgtttgggaagagagttggctttcattcaagttaagatg 187  Q
    ||||||| |||||||||||||  || ||| | ||||||||| ||||||||    
T  346827 gacctagaacttgtttgggaaaggacttgtccttcattcaaattaagatg 346778  T

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Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 38 - 187
Target Start/End: Complemental strand, 355586 - 355437
Alignment:
Q  38 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 137  Q
    |||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||||||||| || | || |||||||||||  |||||| ||||||||    
T  355586 tggggaaaagattgtttggagttcaagccagagagatggatatctgagagaggaggcattgttcatacaccatcttacaagtttattagttataatgctg 355487  T
Q  138 gacctaggacttgtttgggaagagagttggctttcattcaagttaagatg 187  Q
    ||||||| |||||||||||||  || ||| | ||||||||| ||||||||    
T  355486 gacctagaacttgtttgggaaaggacttgtccttcattcaaattaagatg 355437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 12164360 - 12164242
Alignment:
Q  38 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 137  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| | | |||||| || |||||||  || |||||||||||| ||  |||||||||||    
T  12164360 tggggagaagattgcttggaatttaagccagagaggtggatttctcaaaaaggagggatagtttatgttccttcttacaagttcattgcttttaatgctg 12164261  T
Q  138 gacctaggacttgtttggg 156  Q
    |||| |||| |||||||||    
T  12164260 gaccaaggagttgtttggg 12164242  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 12175885 - 12175767
Alignment:
Q  38 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 137  Q
    |||||| ||||||| ||| | ||||| |||||||||||||||||| ||| |||||| ||  || |||  || |||||||||||| ||  ||| |||||||    
T  12175885 tggggagaagattgtttgaaatttaaaccagagaggtggatttctaagaaaggagggataattcatgttccctcttacaagttcattgctttcaatgctg 12175786  T
Q  138 gacctaggacttgtttggg 156  Q
    |||| |||| |||||||||    
T  12175785 gaccaaggagttgtttggg 12175767  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 1033977 - 1033937
Alignment:
Q  29 gaaaatatttggggaaaagattgcttggagtttaagccaga 69  Q
    |||||||| || |||||||||||||||||||| ||||||||    
T  1033977 gaaaatatatgaggaaaagattgcttggagttcaagccaga 1033937  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 35 - 156
Target Start/End: Original strand, 3321649 - 3321770
Alignment:
Q  35 atttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatg 134  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||| ||| |||||  ||  || |||  || |||||||||||  ||  ||| ||||    
T  3321649 atttggggagaagattgcttggagtttaaaccagagaggtggatttctaagaaaggagaaataattcatgtaccttcttacaagtttattgctttcaatg 3321748  T
Q  135 ctggacctaggacttgtttggg 156  Q
    ||||||| |||| |||||||||    
T  3321749 ctggaccaaggagttgtttggg 3321770  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 36668212 - 36668094
Alignment:
Q  38 tggggaaaagattgcttggagtttaagccagagaggtggatttctgagagaggaggcattgtttatgcgccgtcttacaagttctttagttttaatgctg 137  Q
    |||||| ||||||||||||| ||||| |||||||||||| ||||| ||| |||||| |   || |||  || |||||||||||| ||  ||| |||||||    
T  36668212 tggggagaagattgcttggaatttaaaccagagaggtgggtttctaagaaaggagggacaattcatgtaccttcttacaagttcattgctttcaatgctg 36668113  T
Q  138 gacctaggacttgtttggg 156  Q
    |||| |||| | |||||||    
T  36668112 gaccaaggagtcgtttggg 36668094  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 12963946 - 12964008
Alignment:
Q  4 ttctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagcc 66  Q
    ||||||||||||||||||||||   ||| | || |||||| ||||||||||||| ||||||||    
T  12963946 ttctttgtatgcaatgggaaggatggaacaaatatggggagaagattgcttggaatttaagcc 12964008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 30368180 - 30368266
Alignment:
Q  5 tctttgtatgcaatgggaagggatgaaaatatttggggaaaagattgcttggagtttaagccagagaggtggatttctgagagagga 91  Q
    ||||||||||| |||||||||   ||||| || |||||| |||||||| |||| |||||||| ||||| ||| | || |||||||||    
T  30368180 tctttgtatgctatgggaaggatggaaaaaatatggggagaagattgcatggaatttaagcctgagagatgggtatcagagagagga 30368266  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 13891634 - 13891606
Alignment:
Q  41 ggaaaagattgcttggagtttaagccaga 69  Q
    |||||||||||||||||||||||||||||    
T  13891634 ggaaaagattgcttggagtttaagccaga 13891606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 13895985 - 13895945
Alignment:
Q  29 gaaaatatttggggaaaagattgcttggagtttaagccaga 69  Q
    ||||| || ||||||||||||||||||||||| ||||||||    
T  13895985 gaaaacatatggggaaaagattgcttggagttcaagccaga 13895945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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