View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_25 (Length: 261)
Name: NF18132_low_25
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 177 - 232
Target Start/End: Complemental strand, 32870022 - 32869967
Alignment:
| Q |
177 |
gtgatagtaaaaatatttggtttccctagaataaaaatggaaaacaaagaaaaggg |
232 |
Q |
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| T |
32870022 |
gtgatagtaaaaatatttggtttccctagaataaaaatggaaaacaaagaaaaggg |
32869967 |
T |
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Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 32870207 - 32870150
Alignment:
| Q |
1 |
acattttcacttgattttcactagcgaaaagacgaacattcatgtgtccgtctttccg |
58 |
Q |
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| T |
32870207 |
acattttcacttgattttcactagcgaaaagacgaacattcatgtgtctgtctttccg |
32870150 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 23091109 - 23091147
Alignment:
| Q |
20 |
actagcgaaaagacgaacattcatgtgtccgtctttccg |
58 |
Q |
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| T |
23091109 |
actagcgaaaagacgagcattcatgtgcccgtctttccg |
23091147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 23775346 - 23775384
Alignment:
| Q |
20 |
actagcgaaaagacgaacattcatgtgtccgtctttccg |
58 |
Q |
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| T |
23775346 |
actagcgaaaagacggacattcacgtgtccgtctttccg |
23775384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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