View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_26 (Length: 260)
Name: NF18132_low_26
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 26153959 - 26153749
Alignment:
| Q |
19 |
cataggagcaatgttgtcaggtatggattgcagtaaataacaatctgttcaaattcttctatacgctacaatattatagtgccgctataactgctatttc |
118 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26153959 |
cataggaacaatgttgtcaggtatggattgtagtaaataacaatctgttcaaatccttttatacgctacaatattatagtgccgctataactgctatttc |
26153860 |
T |
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| Q |
119 |
acatcacaatagtgatttgttcaaattgcgctaagttgtaggcctgtagca-cgctataggctcctatttgataacattacatatggatgatagaacatt |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| || |||| || |||| |||||||||||| |||||| |||||||| | |||||| |
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| T |
26153859 |
acatcacaatagtgatttgttcaaattacgctaagttgtaggcttgcagcaccgttata-gctcctatttgacaacattgcatatggagg---taacatt |
26153764 |
T |
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| Q |
218 |
tcaaattaatcatat |
232 |
Q |
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||||||||||||||| |
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| T |
26153763 |
tcaaattaatcatat |
26153749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 26158913 - 26158773
Alignment:
| Q |
19 |
cataggagcaatgttgtcaggtatggattgcagtaaataacaatctgttcaaattcttctatacgctacaatattatagtgccgctataactgctatttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26158913 |
cataggagcaatgttgtcaggtatggattgcagtaaataaaaatctgttcaaattcttctatacgctacaatattatagtgccgctataactgctatttc |
26158814 |
T |
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| Q |
119 |
acatcacaatagtgatttgttcaaattgcgctaagttgtag |
159 |
Q |
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| T |
26158813 |
acatcacaatagtgatttgttcaaattgcgctaagttgtag |
26158773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 232
Target Start/End: Complemental strand, 26167257 - 26167047
Alignment:
| Q |
19 |
cataggagcaatgttgtcaggtatggattgcagtaaataacaatctgttcaaattcttctatacgctacaatattatagtgccgctataactgctatttc |
118 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26167257 |
cataggaacaatgttgtcaggtatggattgtagtaaataacaatctgttcaaatccttttatacgctacaatattatagtgccgctataactgctatttc |
26167158 |
T |
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| Q |
119 |
acatcacaatagtgatttgttcaaattgcgctaagttgtaggcctgtagca-cgctataggctcctatttgataacattacatatggatgatagaacatt |
217 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| || |||| || |||| |||||||||||| |||||| |||||||| | |||||| |
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| T |
26167157 |
acatcacaatagtgatttgttcaaattacgctaagttgtaggcttgcagcaccgttata-gctcctatttgacaacattgcatatggagg---taacatt |
26167062 |
T |
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| Q |
218 |
tcaaattaatcatat |
232 |
Q |
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||||||||||||||| |
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| T |
26167061 |
tcaaattaatcatat |
26167047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 19 - 159
Target Start/End: Complemental strand, 26172211 - 26172071
Alignment:
| Q |
19 |
cataggagcaatgttgtcaggtatggattgcagtaaataacaatctgttcaaattcttctatacgctacaatattatagtgccgctataactgctatttc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26172211 |
cataggagcaatgttgtcaggtatggattgcagtaaataaaaatctgttcaaattcttctatacgctacaatattatagtgccgctataactgctatttc |
26172112 |
T |
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| Q |
119 |
acatcacaatagtgatttgttcaaattgcgctaagttgtag |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
26172111 |
acatcacaatagtgatttgttcaaattgcgctaagttgtag |
26172071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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