View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18132_low_30 (Length: 241)
Name: NF18132_low_30
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 45369203 - 45369432
Alignment:
| Q |
1 |
ctcaactgaagaaattacccctttagttctgcattcataaattattaatgatcaccgccatatttgtggtacttgccagggaggtggttggtgcaatgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45369203 |
ctcaactgaagaaattacccctttagttctgcattcataaattattaatgatcaccgccatatttgtggtacttgccagggaggtggttggtgcaatgac |
45369302 |
T |
|
| Q |
101 |
ttgaaatcatgcttggagagagcaaacactcgcaggggttcaacaaattacatgaccaaatatgagaccttcaatggtattttaagcaacaatgctaccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45369303 |
ttgaaatcatgcttggagagagcaaaaactcgcaggggttcaacaaattacatgaccaaatatgagaccttcaatggtattttaagcaacaatgctaccg |
45369402 |
T |
|
| Q |
201 |
ttaatccaggtaaatcaatatctgctctgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45369403 |
ttaatccaggtaaatcaatatctgctctgt |
45369432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 45385726 - 45385955
Alignment:
| Q |
1 |
ctcaactgaagaaattacccctttagttctgcattcataaattattaatgatcaccgccatatttgtggtacttgccagggaggtggttggtgcaatgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45385726 |
ctcaactgaagaaattacccctttagttctgcattcataaattattaatgatcaccgccatatttgtggtacttgccagggaggtggttggtgcaatgac |
45385825 |
T |
|
| Q |
101 |
ttgaaatcatgcttggagagagcaaacactcgcaggggttcaacaaattacatgaccaaatatgagaccttcaatggtattttaagcaacaatgctaccg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45385826 |
ttgaaatcatgcttggagagagcaaaaactcgcaggggttcaacaaattacatgaccaaatatgagaccttcaatggtattttaagcaacaatgctaccg |
45385925 |
T |
|
| Q |
201 |
ttaatccaggtaaatcaatatctgctctgt |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45385926 |
ttaatccaggtaaatcaatatctgctctgt |
45385955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University