View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_34 (Length: 207)
Name: NF18132_low_34
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 23446649 - 23446825
Alignment:
| Q |
17 |
agttcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaacttcag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
23446649 |
agttcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcacgagctgcatttccagccaactcaagaacttcag |
23446748 |
T |
|
| Q |
117 |
cagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagcatatatacccttcttc |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23446749 |
cagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagcatatatacccttcttc |
23446825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 20 - 177
Target Start/End: Complemental strand, 24298238 - 24298081
Alignment:
| Q |
20 |
tcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaacttcagcag |
119 |
Q |
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|||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||| |
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| T |
24298238 |
tcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacttcagcag |
24298139 |
T |
|
| Q |
120 |
caagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc |
177 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
24298138 |
caagatattcaagaactgctgctaggtataccggagcacctgttccgacacgctgagc |
24298081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 23448003 - 23448163
Alignment:
| Q |
17 |
agttcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaacttcag |
116 |
Q |
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||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||| |||| |
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| T |
23448003 |
agttcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcag |
23448102 |
T |
|
| Q |
117 |
cagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc |
177 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |
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| T |
23448103 |
cagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagc |
23448163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 23875450 - 23875290
Alignment:
| Q |
17 |
agttcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaacttcag |
116 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||| |||| |
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| T |
23875450 |
agttcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcag |
23875351 |
T |
|
| Q |
117 |
cagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc |
177 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |
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| T |
23875350 |
cagcgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagc |
23875290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 20 - 177
Target Start/End: Original strand, 23423506 - 23423663
Alignment:
| Q |
20 |
tcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaacttcagcag |
119 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||||| |
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| T |
23423506 |
tcttcatcattcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgtgctgcatttccagccaactcaagaacctcagcag |
23423605 |
T |
|
| Q |
120 |
caagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc |
177 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||| || || ||||||||||| |
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|
| T |
23423606 |
cgagatattcaagaactgctgctaggtatactggagcacctgtgcctacacgctgagc |
23423663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 26827999 - 26827838
Alignment:
| Q |
20 |
tcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaacttcagcag |
119 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| || ||||| ||||| ||||||| ||||||| |
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| T |
26827999 |
tcttcatcattcctaacagccaacaacaaatgccttggaatgattctattcttcttgttatcacgagcagcgtttcctgccaattcaagaacctcagcag |
26827900 |
T |
|
| Q |
120 |
caagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagcatat |
181 |
Q |
| |
|
| || |||||||||||||| || ||||| || ||||||||||| |||||||||||||||||| |
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| T |
26827899 |
cgaggtattcaagaactgcagctaggtaaaccggagcaccggtgccgacacgctgagcatat |
26827838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 170
Target Start/End: Complemental strand, 12165198 - 12165045
Alignment:
| Q |
19 |
ttcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaacttcagca |
118 |
Q |
| |
|
||||||||| ||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||| |
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| T |
12165198 |
ttcttcatcgttcctaacagccaacaacacatgccttggaatgattctattcttcttgttatcacgagctgcatttccagccaactcaagaacctcagca |
12165099 |
T |
|
| Q |
119 |
gcaagatattca--agaactgctgccaggtatactggagcaccggttccgacac |
170 |
Q |
| |
|
|| ||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
12165098 |
gcgagatattcaagagaactgctgctaggtatactggagcaccggttccgacac |
12165045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 181
Target Start/End: Complemental strand, 35961781 - 35961620
Alignment:
| Q |
20 |
tcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaacttcagcag |
119 |
Q |
| |
|
|||||||||||| | ||||| ||||||| ||||||||||||||| |||||||||||||||||| |||| ||||| |||||||| ||||||||||||||| |
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|
| T |
35961781 |
tcttcatcattcctcacagccaacaacacatgccttggaataatcctattcttcttgttatcacgagcagcattaccagccaattcaagaacttcagcag |
35961682 |
T |
|
| Q |
120 |
caagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagcatat |
181 |
Q |
| |
|
|||||||||||||||| || || | ||| || ||||||||||| |||||||| ||||||||| |
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|
| T |
35961681 |
caagatattcaagaacagcggctaagtaaacaggagcaccggtgccgacacgttgagcatat |
35961620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 41244412 - 41244503
Alignment:
| Q |
20 |
tcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaac |
111 |
Q |
| |
|
|||||||||||| | || || ||||||| ||||||||||| || |||||||||||||||||| | || |||||||||||||| ||||||| |
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|
| T |
41244412 |
tcttcatcattcctcactgccaacaacacgtgccttggaattatcctattcttcttgttatcacgtgccgcatttccagccaattcaagaac |
41244503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 41257885 - 41257791
Alignment:
| Q |
17 |
agttcttcatcattcataacagcaaacaacaaatgccttggaataattctattcttcttgttatcaggagctgcatttccagccaacacaagaac |
111 |
Q |
| |
|
||||||||||| ||| | ||||| ||||||| ||||| || || || || ||||||||||| ||| | |||||||||||||||||| ||||||| |
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|
| T |
41257885 |
agttcttcatcgttcctcacagccaacaacacgtgcctagggatgatcctgttcttcttgttgtcacgtgctgcatttccagccaactcaagaac |
41257791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 41244594 - 41244658
Alignment:
| Q |
113 |
tcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc |
177 |
Q |
| |
|
||||||||||||||||||||||| || || ||||| || |||||||| || || ||||||||||| |
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|
| T |
41244594 |
tcagcagcaagatattcaagaacagcggcgaggtaaacaggagcaccagtaccaacacgctgagc |
41244658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Complemental strand, 41257711 - 41257647
Alignment:
| Q |
113 |
tcagcagcaagatattcaagaactgctgccaggtatactggagcaccggttccgacacgctgagc |
177 |
Q |
| |
|
||||||||||||||||||||||| || || | ||| || |||||||| || || ||||||||||| |
|
|
| T |
41257711 |
tcagcagcaagatattcaagaacagcagctaagtaaacaggagcaccagtaccaacacgctgagc |
41257647 |
T |
|
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