View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_4 (Length: 602)
Name: NF18132_low_4
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 49225325 - 49224740
Alignment:
| Q |
1 |
agattcgtacttacagtgttataaatgtgaacaatatgaggagaataagggaaagtgcatagtatgttgaagaataaccataagactcggttttacgaca |
100 |
Q |
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| T |
49225325 |
agattcgtacttacagtgttataaatgtgaacaatatgaggagaataagggaaagtgcatagtatgttgaagaataaccataagactcggttttacgaca |
49225226 |
T |
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| Q |
101 |
gaagtaacaaacaatgaggagtaataaacagaagccaaagcccaagaaccagactgctgcaatgctgaatacaggaactgctgtatatgccgctgactgt |
200 |
Q |
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| T |
49225225 |
gaagtaacaaacaatgaggagtaataaacagaagccaaagcccaagaaccagactgctgcaatgctgaatacaggaactgctgtatatgccgctgactgt |
49225126 |
T |
|
| Q |
201 |
attcaataaaaaggaaaaatagtgagtggacttaatttttggtatgaaaattcaatactacaggactaactaaaaggctaatttaaacacctgaaaatta |
300 |
Q |
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| T |
49225125 |
attcaataaaaaggaaaaatagtgagtggacttaatttttggtatgaaaattcaatactgcaggactaactaaaaggctaatttaaacacctgaaaatta |
49225026 |
T |
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| Q |
301 |
tggttaatcacgtccaaaatcatggttaataagtgtagacaactggtatattcattaagcatctaaggaacgtaattgaccatctattagaactgtgtta |
400 |
Q |
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| T |
49225025 |
tggttaatcatgtccaaaatcatggttaataagtgtagacaactggtatattcattaagcatctaaggaaagtaattgaacatctattagaactgtgtta |
49224926 |
T |
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| Q |
401 |
accacttacaagttgttgcgaaagtttccataaattagttgtccaaaaatcatttataaagtaaactaaaacgcagaataaataaaatcccccacgtaaa |
500 |
Q |
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| T |
49224925 |
accacttacaaattgtcgcgaaagtttccaaaaattagttgtccaaaaatcatttataaaataaactaaaacgcagaataaataaaatcccccacgtaaa |
49224826 |
T |
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| Q |
501 |
ctaagctcaaaacttaaaccttaattaacaatgataattagcaaaaacagaacaaattatattgagtaagggttgaatgaggttac |
586 |
Q |
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| T |
49224825 |
ctaagctcaaaacttaaaccttaattaacaatgataattagcaaaaacagaacaaattatattgagtaagggttgaatgaggttac |
49224740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 425
Target Start/End: Original strand, 37557405 - 37557461
Alignment:
| Q |
369 |
aacgtaattgaccatctattagaactgtgttaaccacttacaagttgttgcgaaagt |
425 |
Q |
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| T |
37557405 |
aacgtaattaatcacctatttgaactgtgttaaccacttaaaagttgtcgcgaaagt |
37557461 |
T |
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