View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_7 (Length: 537)
Name: NF18132_low_7
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 528
Target Start/End: Original strand, 1131087 - 1131597
Alignment:
| Q |
18 |
agtagggctactcggttgaattaactctttagataatactatcgatgatttacctttctgattggaattggaaatctgtgacaagcttaacttgaagcat |
117 |
Q |
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| T |
1131087 |
agtagggctactcggttgaattaactctttagataatactatcgatgattttcctttctgattggaattggaaatctgtgacaagcttaacttgaagcgt |
1131186 |
T |
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| Q |
118 |
ttattcatgataatattttaaattcaagttatgagaatttagaaggacaaacaatatttcatgatgtacaaagatgatcttctcttctaaagaagcccaa |
217 |
Q |
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| T |
1131187 |
ttattcatgatagtattttaaattcaagttatgagaatttagaaggacaaacaatatttaatgatgtacaaagatgatcttctcttctaaagaagcccaa |
1131286 |
T |
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| Q |
218 |
gcttcaaacagaaacatgtgacactaaaaatgtttgaaaattcatagcaacttagcatggaaggttaaaacaaagcttacacacacagttgaaatccaag |
317 |
Q |
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| T |
1131287 |
gcttcaaacagaaacatgtgacactaaaaatgtttgaaaattcatagcaacttagcatggaaggttaaaacaaagcttacacacacagttgaaatccaag |
1131386 |
T |
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| Q |
318 |
ataacatggatatggatggtgcagagcttctagaacggcgaggctcagagcgattatcatttgcaccaccgttagctccttttcctctagctttcttaat |
417 |
Q |
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| T |
1131387 |
acaacatggatatggatggtgcagagcttctagaacggcgaggctcagagcgattatcatttgcaccaccgttagctccttttcctctagctttcttaat |
1131486 |
T |
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| Q |
418 |
tgagtcataagctcgttcaaatttttcctccttgatatatttcttatcttctctgtgcaacttgattccttcttttatgcttccatagtttcctacatct |
517 |
Q |
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| T |
1131487 |
tgagtcataagctcgttcaaatttttcctccttgatatatttcttatcttctctgtgcaacttgattccttcttttatgcttccatagtttcctacatct |
1131586 |
T |
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| Q |
518 |
taatagaataa |
528 |
Q |
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| T |
1131587 |
taatagaataa |
1131597 |
T |
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