View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18132_low_9 (Length: 480)
Name: NF18132_low_9
Description: NF18132
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18132_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 46602610 - 46602352
Alignment:
| Q |
17 |
atgaaagaaatgtttgatatataagagaggggatacacatacctaatatcttaagattttgaatagagatgcgacgtctccctctattgtagtcttgagt |
116 |
Q |
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| T |
46602610 |
atgaaaaaaatatttgatatataagagaggggacacacatacctaatatcttaagattttgaatagagatgtgacgtctccctctattgtagtcttgagt |
46602511 |
T |
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| Q |
117 |
catttgacccattcttgtttcttccgtgaccccgaactttccaacaaaattttgaagttcaatttacttatatggttgctcttaacctagtatgaatgat |
216 |
Q |
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| T |
46602510 |
catttgactcattcttgtttcttccgtgaccccgaactttccaacaaaattttgaagttcaatttacttatatgattgctcttaacctagtatgaatgat |
46602411 |
T |
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| Q |
217 |
cttcctgacagtcactcatgatccaacactattttagcacatataaaaatagaattgtc |
275 |
Q |
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| T |
46602410 |
cttcccgacagtcacttatgatccaacactattttagcacatataaaaatagaattgtc |
46602352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 376 - 461
Target Start/End: Complemental strand, 46602289 - 46602204
Alignment:
| Q |
376 |
gtgaagcaacccgattacttgaaacaatcaagtgtgtggttgaaatgaggttcagcgatgttatttttgagttaaatactaaagtg |
461 |
Q |
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| T |
46602289 |
gtgaagcaacccgattacttcaaacaatcaagtgtgtggttgaaatgaggttcagcgatgttatttttgagttaaatactaaagtg |
46602204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 37626644 - 37626696
Alignment:
| Q |
24 |
aaatgtttgatatataagagaggggatacacatacctaatatcttaagatttt |
76 |
Q |
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| T |
37626644 |
aaatgttggatatataagagaggtcatacatatacctaatgtcttaagatttt |
37626696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 87
Target Start/End: Complemental strand, 42059907 - 42059847
Alignment:
| Q |
27 |
tgtttgatatataagagaggggatacacatacctaatatcttaagattttgaatagagatg |
87 |
Q |
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| T |
42059907 |
tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatg |
42059847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 7301699 - 7301647
Alignment:
| Q |
24 |
aaatgtttgatatataagagaggggatacacatacctaatatcttaagatttt |
76 |
Q |
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| T |
7301699 |
aaatgttagatatataaaagaggggacacatatacctaatatcttaaggtttt |
7301647 |
T |
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