View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18133_high_4 (Length: 311)
Name: NF18133_high_4
Description: NF18133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18133_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 22464750 - 22465039
Alignment:
| Q |
9 |
gagatgaagctagtaccttgcctctcagatggtgaaagaccaacatacatgaaagtagatacatgattagaagcatgcaatggttgaattttggttaata |
108 |
Q |
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| T |
22464750 |
gagatgaaactagtaccttgcctctcagatggtgaaagaccaacatacatgaaagtagatacatgattagaagcatgcaatggttgaattttggttaata |
22464849 |
T |
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| Q |
109 |
gatgaaccttgaatcaaagacattaacttctcatattgctcatgtgtgatagctgatacactagctttaggatcaatacgtgttggagaattttctacat |
208 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22464850 |
gatgaaccttgaatcaaagacattaacatctcatattgctcatgtgtgatagctgatacactagctttagaatcaatacgtgttggagaattttctacat |
22464949 |
T |
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| Q |
209 |
gattatcatccttctttgcagatgtaaaatgattaacatatgcttaattatagtttacctgaa---gaggtggaactccaagcttctcat |
295 |
Q |
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| T |
22464950 |
gattatcatccttctttgcagatgtaaaatgattaacatatgcttaattatagtttacctgaagatgaggtggaactccaagcttctcat |
22465039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 31036030 - 31036233
Alignment:
| Q |
18 |
ctagtaccttgcctctcagatggtgaaagaccaacatacatgaaagtagatacatgattagaagcatgcaa--tggttgaattttggttaatagatgaac |
115 |
Q |
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| T |
31036030 |
ctagtaccttgtctgtcagatggtgaaagaccagcagacatggaagaagaaacctgattagaagcatgcacattggctgaactttgatta---------c |
31036120 |
T |
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| Q |
116 |
cttgaatcaaagacattaacttctcatattgctcatgtgtgatagctgatacactagctttaggatcaatacgtgttggagaattttctacatgattatc |
215 |
Q |
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||| |||||||||||||| ||||| ||||||||||||||||| | | ||||||| ||||| |||||| || || |||||| ||| ||||| ||||| | |
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| T |
31036121 |
cttaaatcaaagacattagcttctagtattgctcatgtgtgattgacggtacactaactttatgatcaacacatgctggagagtttactacaggattagc |
31036220 |
T |
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| Q |
216 |
atccttctttgca |
228 |
Q |
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||||| ||||||| |
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| T |
31036221 |
atcctcctttgca |
31036233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 2985442 - 2985274
Alignment:
| Q |
12 |
atgaagctagtaccttgcctctcagatggtgaaagaccaacatacatgaaagtagatacatgattagaagcatg--caatggttgaattttggttaatag |
109 |
Q |
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| T |
2985442 |
atgaaactagtaccttgcctgtcagatggtgaatgaccaagagagatggaggaagaaacctgattagaagcatgtacaacatttgaaccttgataaagag |
2985343 |
T |
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| Q |
110 |
atgaaccttgaatcaaagacattaacttctcatattgctcatgtgtgatagctgatacactagctttag |
178 |
Q |
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| T |
2985342 |
atgaattctgaagtaaatacatcaacttttcatattgctcatgtgtgatagctgaaatagtagctttag |
2985274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 163
Target Start/End: Original strand, 19473752 - 19473807
Alignment:
| Q |
108 |
agatgaaccttgaatcaaagacattaacttctcatattgctcatgtgtgatagctg |
163 |
Q |
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| T |
19473752 |
agatgaactttgaagtaaagacattaacctctcattttgcttatgtgtgatagctg |
19473807 |
T |
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