View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18133_low_1 (Length: 808)
Name: NF18133_low_1
Description: NF18133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18133_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 158 - 791
Target Start/End: Original strand, 53635295 - 53635932
Alignment:
| Q |
158 |
aaatacatttaatgctttttaattatatgtatattgccgtcactactggaaacttctgagtctgtccctgatcaaatgtgacttattgattgatataatg |
257 |
Q |
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| T |
53635295 |
aaatacatttaatgctttttaattatatatatattgccgtcactactggaaacttctgagtctgtctctgatcaaatgtgacttattgattgatataatg |
53635394 |
T |
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| Q |
258 |
ataaaaatatatttatgcacagtgtgacttatttacttgtgcacacattagacaaatcaaacatcatttgttattgag----tgtatttcaccatctgaa |
353 |
Q |
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| T |
53635395 |
ataaaaatatatttatgcacaatgtgacttatttacttgtgcacacat-----aaatcaaacatcatttgttattgagtgagtgtatttcaccatctgaa |
53635489 |
T |
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| Q |
354 |
ttctacaacgtttcacatatttttggagtatacttctaaacagggacgaaaggacatgttatgttctaggggataaagccttgctccctttttacattat |
453 |
Q |
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| T |
53635490 |
ttctacaacgattcacatatttttggagtatacttctaaacagggacgaaaggacatgttatgttctaggggataaagccttgctccctttttacattat |
53635589 |
T |
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| Q |
454 |
tctatatgtatccaccatgtgatgttttgtactctgattttgtctttttgc------agaagaagaagaagatctagaacggaacttcaggagaattcgt |
547 |
Q |
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| T |
53635590 |
tctatatgtatccaccgtgtgatgttttgtactctgattttgtctttttgcagaagaagaagaagaagaagatctagaac-aaacttcaggagaattcgt |
53635688 |
T |
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| Q |
548 |
ccacaattatgagctagaaaaatgtggttttaacgatctcttccttagtttaaaccaaatgagttttgtgaagtacaatatttatactttaagctctagc |
647 |
Q |
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| T |
53635689 |
ccacaattatgagctagaaaaatgtggttttaacgatctcttccttagtttaaaccaaatgagttttgtgaagtacaatatttatactttaatctctagc |
53635788 |
T |
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| Q |
648 |
aaatatcatcgtatgaatgttgaattatgcttcagggatggatttggcgtatttacgagagccaaaacacattatatccaaatcactcttgtagttttgt |
747 |
Q |
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| T |
53635789 |
aaatatcatcgtatgaatgttgaattatgcttcagggatggatttggcgtatttacgagagccaaaacacattatatccaaatcactcttgtagttttgt |
53635888 |
T |
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| Q |
748 |
tccaatagccaacaacatcactaattatttcaaaagctaattct |
791 |
Q |
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| T |
53635889 |
tccaatagccaacaacatcactaattatttcaaaagctaattct |
53635932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 53633525 - 53633612
Alignment:
| Q |
140 |
tatttatgtttttgtaagaaatacatttaatgctttttaattatatgtatattgccgtcactactggaaacttctgagtctgtccctga |
228 |
Q |
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| T |
53633525 |
tatttatgtttttaaaa-aaattcatttaatacttcttaattatatgtatattgccttcactagtcgaaacttctgggtctgtccctga |
53633612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 170
Target Start/End: Original strand, 53635227 - 53635281
Alignment:
| Q |
115 |
gcacacaacaaccaaaaattatgaatatttatgtttttgtaagaaatacatttaat |
170 |
Q |
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| T |
53635227 |
gcacacaacaaccaactatgatgtatatttatgtttt-gtaagaaatacatttaat |
53635281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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