View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18133_low_6 (Length: 288)
Name: NF18133_low_6
Description: NF18133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18133_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 3017588 - 3017337
Alignment:
| Q |
19 |
gttaagccatctattatttagcttactcgtttagttctttagtctttctattttgttgttgaagaccaaaacttatgtttttgtttaagatgaaaaatct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017588 |
gttaagccatctattatttagcttactcgtttagttctttagtctttctattttgttgttgaagaccaaaacttatgtttttgtttaagatgaaaaatct |
3017489 |
T |
|
| Q |
119 |
gnnnnnnnnnnnnnnnnnnnnnatatagattaagctaccttgtttaatttcatcatcatgttcattttgtaaatctaaagtaaaaggaccaaattttcat |
218 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3017488 |
gttttttttttttttttta---atatagatttagctaccttgtttaatttcatcatcatgttcattttgtaaatctaaagcaaaaggaccaaattttcat |
3017392 |
T |
|
| Q |
219 |
taatccttaatttctccttctattccaaatccgaaaattaataaaccattgaatc |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017391 |
taatccttaatttctccttctattccaaatccgaaaattaataaaccattgaatc |
3017337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 46420552 - 46420794
Alignment:
| Q |
19 |
gttaagccatctattatttagcttactcgtttagttctttagtctttctattttgttgttgaagaccaaaacttatgtttttgtttaagatgaaaaatct |
118 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46420552 |
gttaagccatcaattatttagcttactcgtttagttctttagtttttctattttgttgttgaagaccaaaacttatatttttgtttaagatgaaaaatct |
46420651 |
T |
|
| Q |
119 |
gnnnnnnnnnnnnnnnnnnnnnatatagattaagctaccttgtttaatttcatcatcatgttcattttgtaaatctaaagtaaaaggaccaaattttcat |
218 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
46420652 |
gttttttttt------------atatagatttagctaccttgtttaatttcatcatcatgttcattttgtaaatctaaagcaaaaagaccaaattttcat |
46420739 |
T |
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| Q |
219 |
taatccttaatttctccttctattccaaatccgaaaattaataaaccattgaatc |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46420740 |
taatccttaatttctccttctattccaaatccgaaaattaataaaccattgaatc |
46420794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 273
Target Start/End: Complemental strand, 34343860 - 34343611
Alignment:
| Q |
19 |
gttaagccatctattatttagcttactcgtttagttctttagtctttctattttgttgttgaagaccaaaacttatgtttttgtttaagatgaaaaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34343860 |
gttaagccatctattatttagcttactcatttagttctttagtttttctattttgttgttgaagaccaaaacttatgtttttgtttaaaatgaaaaatct |
34343761 |
T |
|
| Q |
119 |
gnnnnnnnnnnnnnnnnnnnnnatatagattaagctaccttgtttaatttcatcatcatgttcattttgtaaatctaaagtaaaaggaccaaattttcat |
218 |
Q |
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| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
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| T |
34343760 |
gttttttttttttttat-----atatagatttagctaccttgtttaatttcatcatcatgttcattttgtaaatctaaagcaaaaagaccaaattttcat |
34343666 |
T |
|
| Q |
219 |
taatccttaatttctccttctattccaaatccgaaaattaataaaccattgaatc |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34343665 |
taatccttaatttctccttctattccaaatccgaaaattaataaaccattgaatc |
34343611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 158 - 273
Target Start/End: Original strand, 37279157 - 37279272
Alignment:
| Q |
158 |
ttgtttaatttcatcatcatgttcattttgtaaatctaaagtaaaaggaccaaattttcattaatccttaatttctccttctattccaaatccgaaaatt |
257 |
Q |
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||||||||||||| ||||||||||||||||| ||||||||| |||| |||| ||||||||||||||||||| ||| ||||||||||||||||| |||||| |
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| T |
37279157 |
ttgtttaatttcaacatcatgttcattttgtcaatctaaagcaaaaagacccaattttcattaatccttaagttccccttctattccaaatccaaaaatt |
37279256 |
T |
|
| Q |
258 |
aataaaccattgaatc |
273 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
37279257 |
aataaaccattgaatc |
37279272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 37279027 - 37279127
Alignment:
| Q |
19 |
gttaagccatctattatttagcttactcgtttagttctttagtctttctattttgttgttgaagaccaaaacttatgtttttgtttaagatgaaaaatct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||| | |||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37279027 |
gttaagccatctattatttagcttactcatttaattctttaatttttctaatttgttgttgcagaccaaaacttatgtttttgtttaagatgaaaaatct |
37279126 |
T |
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| Q |
119 |
g |
119 |
Q |
| |
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| |
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|
| T |
37279127 |
g |
37279127 |
T |
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