View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18134_high_4 (Length: 347)
Name: NF18134_high_4
Description: NF18134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18134_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 15 - 333
Target Start/End: Original strand, 4215033 - 4215351
Alignment:
| Q |
15 |
aaatgaaacaagcatacaactaggaatatgaaatcaaattacataccttgtgaacatacaaaaatctttctatactctctaaaaacttctcgggcgatga |
114 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
4215033 |
aaatgaaacaagcatgcagctaggaatatgaaatcaaattacataccttgtgaacatacaaaaatctttctatgctctctaaaaacttctcaggcgatga |
4215132 |
T |
|
| Q |
115 |
atcatatgaaggggtgtagtgaggacagtagtccattgaaagatcatctaatctcgcaacaaaagcatcaacaggaagcggaaccgacgaatgtgatacc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| |||||||| ||||| |||||| |
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| T |
4215133 |
atcatatgaaggggtgtagtgaggacagtagtccattgaaagatcatctaatcttgcaacgaaagcatcgacaggaagtggaaccgatgaatgagatacc |
4215232 |
T |
|
| Q |
215 |
agagaatcatcttcggcagctatatagagagcagttctgcccaaatcaacatgcctgttaatgcaaatgctggtttgtttctcaatatcagtaagtctct |
314 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
4215233 |
agagaatcatcttctgcagctatatagagagcagttctacccaaatcaacatgcctgttaatgcaaatgctggtttctttctcaatatcagtaagtctct |
4215332 |
T |
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| Q |
315 |
taatttgtgaacagaatcc |
333 |
Q |
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||||||||||||||||||| |
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| T |
4215333 |
taatttgtgaacagaatcc |
4215351 |
T |
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