View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18134_low_2 (Length: 379)

Name: NF18134_low_2
Description: NF18134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18134_low_2
NF18134_low_2
[»] chr6 (12 HSPs)
chr6 (1-371)||(8289765-8290135)
chr6 (2-162)||(8257056-8257216)
chr6 (8-162)||(8259370-8259524)
chr6 (282-371)||(8257440-8257529)
chr6 (280-371)||(8259785-8259876)
chr6 (281-371)||(8309333-8309423)
chr6 (8-189)||(8308829-8309010)
chr6 (7-105)||(8312208-8312306)
chr6 (283-366)||(8262857-8262940)
chr6 (286-337)||(8325364-8325415)
chr6 (11-60)||(8324953-8325002)
chr6 (4-59)||(8261954-8262009)


Alignment Details
Target: chr6 (Bit Score: 351; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 8289765 - 8290135
Alignment:
Q  1 aatgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagt 100  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8289765 aatgcgcccctccaccatagcatgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagt 8289864  T
Q  101 tccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtctgagaataacataatttcatttctcttataatatt 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8289865 ttcaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtgtgagaataacataatttcatttctcttataatatt 8289964  T
Q  201 tattttctcataataatgcgaaaaattttgaaaatagaaaaagttagacacccttgaaagatataggataggaaatatttgaacctgtccataagtatta 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8289965 tattttctcataataatgcgaaaaattttgaaaatagaaaaagttagacacgcttcaaagatataggataggaaatatttgaacctgtccataagtatta 8290064  T
Q  301 accgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacctttg 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8290065 accgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacctttg 8290135  T

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Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 2 - 162
Target Start/End: Original strand, 8257056 - 8257216
Alignment:
Q  2 atgcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagtt 101  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||  |  ||||||||||| | |||||||||||| ||||    
T  8257056 atgcgaccctccaccattgcacgtgctgcatgtttcacacacaacgccattccttgaacattgaccgcaaataaacggtcaaattgggacatgtcaagtt 8257155  T
Q  102 ccaacacagtttgatcggttggactaaagattccggcattggtgaacattatatctacctg 162  Q
    |||  |  |||||||| || ||||||  |||||| |||||| |||||||||||||||||||    
T  8257156 ccatgattgtttgatcagtgggactagcgattccagcattgctgaacattatatctacctg 8257216  T

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Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 8 - 162
Target Start/End: Original strand, 8259370 - 8259524
Alignment:
Q  8 ccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagttccaaca 107  Q
    ||||||||||| ||||| || || |||||||||||||||||||| || ||||||||||     ||||||||||| ||||||||||| || |||||||  |    
T  8259370 ccctccaccattgcacgcgccgcgtgtttcacacacaatgccatcccacgaacattgacgccaaataaacggtcaagttgggacatatcaagttccatta 8259469  T
Q  108 cagtttgatcggttggactaaagattccggcattggtgaacattatatctacctg 162  Q
    | |||||||| || ||||||| |||||| |||||| |||||||||||||||||||    
T  8259470 ctgtttgatctgtgggactaacgattccagcattgctgaacattatatctacctg 8259524  T

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Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 8257440 - 8257529
Alignment:
Q  282 aacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacctttg 371  Q
    ||||||||||||||||| ||||||||||||||  || ||||||||||||||||| ||||  ||||||||||||||||| |||||||||||    
T  8257440 aacctgtccataagtatcaaccgttgattgaactaggtttttgacttgatcttcatctgtgacatcgcagtggatgtaagtgcacctttg 8257529  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 280 - 371
Target Start/End: Original strand, 8259785 - 8259876
Alignment:
Q  280 tgaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacctttg 371  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||||    
T  8259785 tgaacctgtccataagtatctaccgttgatcgaacgagatttttgacttgatcttcatctgccacatcacaatggatgtaagtgcacctttg 8259876  T

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Target: chr6; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 281 - 371
Target Start/End: Original strand, 8309333 - 8309423
Alignment:
Q  281 gaacctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcacctttg 371  Q
    ||||||| ||||||||||| ||||||||||||| ||||||||| ||||||||||| ||||  || || || ||||||||||||||||||||    
T  8309333 gaacctgcccataagtattgaccgttgattgaacgagatttttaacttgatcttcatctgtcacgtcacaatggatgtaggtgcacctttg 8309423  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 8 - 189
Target Start/End: Original strand, 8308829 - 8309010
Alignment:
Q  8 ccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagttccaaca 107  Q
    ||||| ||||| ||||| || || |||||||||||||| | |||||| || |||||||  |  ||||||||||| ||||||||||| || |||||||  |    
T  8308829 ccctctaccattgcacgcgccgcgtgtttcacacacaacgacattccacggacattgacggcaaataaacggtcaagttgggacatatcaagttccatta 8308928  T
Q  108 cagtttgatcggttggactaaagattccggcattggtgaacattatatctacctggtctgagaataacataatttcatttct 189  Q
      |||||| | || | ||||| |||||| |||||| ||||||| ||||| | ||| | ||||||||||| ||||||||||||    
T  8308929 ttgtttgagctgtggaactaatgattccagcattgctgaacatgatatccagctgttgtgagaataacaaaatttcatttct 8309010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 8312208 - 8312306
Alignment:
Q  7 cccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaacattgattgtgaataaacggtctagttgggacatgtcgagttccaa 105  Q
    |||||||||||| | |||||| ||||||||||| ||||||||||||||||| | ||| |||| ||||||| ||||   ||| || ||||||||||||||    
T  8312208 cccctccaccatcgaacgtgctgcatgtttcacgcacaatgccattcctcggatattaattgagaataaatggtcagcttgagaaatgtcgagttccaa 8312306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 366
Target Start/End: Original strand, 8262857 - 8262940
Alignment:
Q  283 acctgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgtctgctacatcgcagtggatgtaggtgcac 366  Q
    ||||||||||||| ||| || |||||||||| ||||||||| ||||||||||| | ||||| ||| || || ||||||||||||    
T  8262857 acctgtccataagcattgacagttgattgaacgagatttttaacttgatcttcatttgctatatcacaatgaatgtaggtgcac 8262940  T

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Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 286 - 337
Target Start/End: Original strand, 8325364 - 8325415
Alignment:
Q  286 tgtccataagtattaaccgttgattgaatgagatttttgacttgatcttcgt 337  Q
    |||||||||||||| || |||||||||| |||||||||||||||||||||||    
T  8325364 tgtccataagtattgactgttgattgaacgagatttttgacttgatcttcgt 8325415  T

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Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 60
Target Start/End: Original strand, 8324953 - 8325002
Alignment:
Q  11 tccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaac 60  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||||||    
T  8324953 tccaccatcgcacgtgccgcatgtttcacgcacaatgccattcctcgaac 8325002  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 8261954 - 8262009
Alignment:
Q  4 gcgcccctccaccatagcacgtgcggcatgtttcacacacaatgccattcctcgaa 59  Q
    ||||||||||||||| |||||||| || | |||||||||||||| | |||||||||    
T  8261954 gcgcccctccaccatcgcacgtgccgcgtatttcacacacaatgtcgttcctcgaa 8262009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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