View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18134_low_7 (Length: 228)
Name: NF18134_low_7
Description: NF18134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18134_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 7901265 - 7901476
Alignment:
| Q |
1 |
aatggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901265 |
aatggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccag |
7901364 |
T |
|
| Q |
101 |
tttgatgtgagttattatatttcgatcatattcataccttaaccactatagctagcaatgcatggttcccttaatagcatttcgttctttctacagattc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901365 |
tttgatgtgagttattatattttgatcatattcataccttaactactatagctagcaatgcatggttcccttaatagcatttcgttctttctacagattc |
7901464 |
T |
|
| Q |
201 |
aagtgaagaatg |
212 |
Q |
| |
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|||||||||||| |
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| T |
7901465 |
aagtgaagaatg |
7901476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 31213300 - 31213516
Alignment:
| Q |
1 |
aatggcaagcttgggaagtttcatgtctgtattaaactttctcttatttctctttgttggtttaatctcttcatctgaagctgccataaagaaataccag |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
31213300 |
aatggcaagcttgggaagtttcacgtctgtattaaactttctgttatttctctttgttggtttattctcttcatctgaagctgccataaggaaataccag |
31213399 |
T |
|
| Q |
101 |
tttgatgtgagttattatatttcgatcatattca---taccttaacc-actatagctagcaatgcatggttcccttaatagca-tttcgttctttctaca |
195 |
Q |
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||||||||||||||| |||||| ||| ||||||| | ||||||| |||||||||||||||||| |||||||||||||||| ||| |||||||||||| |
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| T |
31213400 |
tttgatgtgagttataatattttgataatattcagcatgccttaactgactatagctagcaatgcaaggttcccttaatagcatttttgttctttctaca |
31213499 |
T |
|
| Q |
196 |
gattcaagtgaagaatg |
212 |
Q |
| |
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|||||||| ||||||| |
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| T |
31213500 |
gattcaagataagaatg |
31213516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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