View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18135_high_3 (Length: 367)
Name: NF18135_high_3
Description: NF18135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18135_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 103 - 349
Target Start/End: Complemental strand, 18691689 - 18691443
Alignment:
| Q |
103 |
tgtataggcatgagcaatgatgtttttctttcaataataagagattttaaatgtatcaacaaagttgaatctagtggaagatattagattctgaaaatat |
202 |
Q |
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| T |
18691689 |
tgtataggcatgagcaatgatgtttttctttcaataataagagattttaaatgtatcaacaaagttgaatctagtggaagatattagattatgaaaatat |
18691590 |
T |
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| Q |
203 |
aatcaattaaggttcgatcttgggtgcaagaaatatcaccatttagtgtcggatacatattcagtttttagcacacatcaaataaannnnnnnncacctt |
302 |
Q |
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| T |
18691589 |
aatcaattaaggttcgatcttgggtgcaataaatatcaccatttagtatcgggcacatattcagtttttagcacacatcgaataataattttttcacctt |
18691490 |
T |
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| Q |
303 |
tagggatgaaacataaaagaaatttaaggattttttcttacactgtg |
349 |
Q |
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| T |
18691489 |
tagggatgaaacataaaagaaatttaaggattttttcttacactgtg |
18691443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 18691804 - 18691716
Alignment:
| Q |
18 |
tgtaagatataaagcaatataattaaattctactaaaagtttttcttgagatcttgctaagaactgcttcataagtattgttctatgta |
106 |
Q |
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| T |
18691804 |
tgtaagatataaagcaatataattaaattttactaaaagtttttcttgagatcttgctaagaactgcttcataagtattgttctatgta |
18691716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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