View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18135_high_4 (Length: 304)
Name: NF18135_high_4
Description: NF18135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18135_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 285
Target Start/End: Complemental strand, 41952917 - 41952642
Alignment:
| Q |
10 |
cacagatgaaactgtcacaagcaatgactctctttcggcgaacttatctacaccgccgccaacgttgaactcactaagccgcgttggcagtggtgctagc |
109 |
Q |
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| T |
41952917 |
cacagatgaaactgtcacaagcaatgactctctttcggcgaacttatctacaccgccgccaacgctgaactcactaagccgcgttggcagtgctgctagc |
41952818 |
T |
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| Q |
110 |
tccgtcgtggatccagaaatctacggcgtctccggcgaggcggagtctcgtaaacttccatcgtcgaaatacaaaggcgtggtgccacagcctaacggac |
209 |
Q |
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| T |
41952817 |
tccgtcgtggatccagaaatctacggcgtctccggtgaggcggagtctcgtaaacttccatcgtcgaaatacaaaggcgtggtgccacagcctaacggac |
41952718 |
T |
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| Q |
210 |
gttggggagcacagatttacgagaaacaccagcgtgtgtggcttggtacgttcaatgaagaagacgaagcagccag |
285 |
Q |
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| T |
41952717 |
gttggggagcacagatttacgagaaacaccagcgtgtgtggcttggtacgttcaatgaagaagacgaagcagccag |
41952642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 279
Target Start/End: Original strand, 22189751 - 22189887
Alignment:
| Q |
143 |
ggcgaggcggagtctcgtaaacttccatcgtcgaaatacaaaggcgtggtgccacagcctaacggacgttggggagcacagatttacgagaaacaccagc |
242 |
Q |
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||||| || ||||| || || ||||| || ||||| |||||||| || || ||||| || || || ||||||||||||||||||||||| || ||||||| |
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| T |
22189751 |
ggcgaagctgagtcacggaagcttccttcttcgaagtacaaaggtgttgtaccacaaccaaatggtcgttggggagcacagatttacgaaaagcaccagc |
22189850 |
T |
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| Q |
243 |
gtgtgtggcttggtacgttcaatgaagaagacgaagc |
279 |
Q |
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| T |
22189851 |
gtgtgtggcttggaacatttaaccaagaagacgaagc |
22189887 |
T |
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