View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18135_low_6 (Length: 201)
Name: NF18135_low_6
Description: NF18135
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18135_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 190
Target Start/End: Original strand, 32525595 - 32525782
Alignment:
| Q |
3 |
gaatttggcccgccacaaagaaattccaagagatcttagcaaatcaagagcttgaagcannnnnnncactgtttcaagtgaaatgaaagactttggcatg |
102 |
Q |
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| T |
32525595 |
gaatttggcctgccacaaagaaattccaagagatcttagcaaatcaagagcttgaagcatttttttcactgtttcaagtgaaatgaaagactttggcatg |
32525694 |
T |
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| Q |
103 |
tgggtgtataaggtttgcatcaacaacttgagcttctctctttgttcaccaaatttctgcttgtatataaacgcaaaaactgccctat |
190 |
Q |
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| T |
32525695 |
tgggtgtataaggtttgcatcaacagcttgagcttctctctttgttcaacaaatttctgcttgtatataaatgcaaatactgccctat |
32525782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 32532012 - 32532158
Alignment:
| Q |
22 |
gaaattccaagagatcttagcaaatcaagagcttgaagcannnnnnncactgtttcaagtgaaatgaaagactttggcatgtgggtgtataaggtttgca |
121 |
Q |
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| T |
32532012 |
gaaattccaagagactttagcaaatcaaaagcctgaagcatttttttcaccatttccagtgaaatgagagatgttggcatgtgtgtgtataaagtttgca |
32532111 |
T |
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| Q |
122 |
tcaacaacttgagcttctctctttgttcaccaaatttctgcttgtat |
168 |
Q |
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| T |
32532112 |
tcaagaactcgagcttctctttttgttgaacaaatttttgcttgtat |
32532158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 32614386 - 32614466
Alignment:
| Q |
69 |
cactgtttcaagtgaaatgaaagactttggcatgtgggtgtataaggtttgcatcaacaacttgagcttctctctttgttc |
149 |
Q |
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| T |
32614386 |
cactgttgcaagtgaaatgaaagatttaggcaagtgagtgtacaaggtttgtatcaagaacttgagcttctcacttagttc |
32614466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 144
Target Start/End: Complemental strand, 32568722 - 32568659
Alignment:
| Q |
81 |
tgaaatgaaagactttggcatgtgggtgtataaggtttgcatcaacaacttgagcttctctctt |
144 |
Q |
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| T |
32568722 |
tgaaatgaaagattttggcatgtggatgtataaggtaagtagcaagaactttagcttctctctt |
32568659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 32645678 - 32645761
Alignment:
| Q |
81 |
tgaaatgaaagactttggcatgtgggtgtataaggtttgcatcaacaacttgagcttctctctttgttcaccaaatttctgctt |
164 |
Q |
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| T |
32645678 |
tgaaattaaagattttggcatgtgggtgcataacgtatgtatcaagaactttagcttctcacttaattctccaaatctctgctt |
32645761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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