View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_high_1 (Length: 1019)
Name: NF18136_high_1
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_high_1 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: scaffold0082 (Bit Score: 177; Significance: 7e-95; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 346 - 530
Target Start/End: Complemental strand, 28818 - 28634
Alignment:
| Q |
346 |
tggttcgcaaagcttgcacttcccggcgaacgaattgaatgaatcatcatgaaaattaattaaacacgtccgttacttaaataccagtaggctgtaaaag |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28818 |
tggttcgcaaagcttgcacttcccggcgaacgaattgaatgaatcatcatgaaaattaattaaacacgtccgttacttaaataccagtaggctgtaaaag |
28719 |
T |
|
| Q |
446 |
cagctccccctgaaagccgtatggatcctttcgctcgatcggcaggctctcctccctacagagttgcttctgttagaagagaaga |
530 |
Q |
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| T |
28718 |
cagctccccctgaaagccgtatggatcccttcgctcgatcggcaggctctcctccctacagagttgcttctgttcgaagagaaga |
28634 |
T |
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Target: chr7 (Bit Score: 130; Significance: 8e-67; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 530 - 726
Target Start/End: Complemental strand, 6101620 - 6101423
Alignment:
| Q |
530 |
attatattataaaacagttgctgcgaaaaaagcgcaaaccaaaagttcatgattggctagaagaactacaagaattgagagagaccgcggatggtctgaa |
629 |
Q |
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|||||||||||||||| ||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| | |||||||||| |
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| T |
6101620 |
attatattataaaacaactgcagggaaaaaagcgcaaaccaaaagtttatgattagctagaagaactacaagaattgagagaaaccacatatggtctgaa |
6101521 |
T |
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| Q |
630 |
tacctcgatgacagttatgacataagt-aattgtcaaacaaatgaaacgacataaggaagatatacctctcattttatcgaccgaattggttggggaa |
726 |
Q |
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| T |
6101520 |
tacctcaatgacagttatgacataagtgaattgtcaaacaaatgaaatgacataaggaagatataactctcactttatcgaccgaattggttagggaa |
6101423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 835 - 995
Target Start/End: Complemental strand, 6101157 - 6100995
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||| |
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| T |
6101157 |
tattttggatgatgtttggaggtacatcgattttcagaaagctggaattcagccaagaacgaatggcattaaactcattctgacaactcgtttgaaacac |
6101058 |
T |
|
| Q |
935 |
gtgtgtcaacaaatgga--ctgtatcagatcatatgctaccgattatgcctctcaatagctat |
995 |
Q |
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| T |
6101057 |
gtgtgtcaacaaatggattttgtaccaaatcatatgctaccgattatgcctctcaatagctat |
6100995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 835 - 951
Target Start/End: Complemental strand, 6234831 - 6234715
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
| |
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|||||||||||||||||||| || || ||||| || |||| |||||||| ||||||||||||||||||||| | |||||||||||||| ||||||||| |
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| T |
6234831 |
tattttggatgatgtttggaaatatattgatttgcagaaggtgggaattcatccaaaagtgaatggcattaaagtgattttgacaactcggttgaaacat |
6234732 |
T |
|
| Q |
935 |
gtgtgtcaacaaatgga |
951 |
Q |
| |
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|| ||||| || ||||| |
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| T |
6234731 |
gtatgtcaccagatgga |
6234715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 835 - 957
Target Start/End: Complemental strand, 6089274 - 6089152
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||| | ||| |||||||||||||||||| | |
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| T |
6089274 |
tattttggatgatgtttggaaatacattgatttggaaaaggtgggaattcatacaaaggtgaatggtattaaagtaattctgacaactcgtttgaaactt |
6089175 |
T |
|
| Q |
935 |
gtgtgtcaacaaatggactgtat |
957 |
Q |
| |
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||||||||||| ||||| ||||| |
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| T |
6089174 |
gtgtgtcaacagatggattgtat |
6089152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 835 - 951
Target Start/End: Complemental strand, 6208413 - 6208297
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
| |
|
|||||||||||||||||||| || || ||||| || |||| |||||||| | ||||||||||||||||||| | |||||||||||||| ||||||||| |
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| T |
6208413 |
tattttggatgatgtttggaattatattgatttgcagaaggtgggaattcatcaaaaagtgaatggcattaaagtgattttgacaactcggttgaaacat |
6208314 |
T |
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| Q |
935 |
gtgtgtcaacaaatgga |
951 |
Q |
| |
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|| ||||| || ||||| |
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| T |
6208313 |
gtatgtcaccagatgga |
6208297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 835 - 951
Target Start/End: Complemental strand, 6237712 - 6237596
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
| |
|
|||||||||||||||||||| || || ||||| || |||| |||||||| | ||||||||||||||||||| | |||||||||||||| ||||||||| |
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| T |
6237712 |
tattttggatgatgtttggaattatattgatttgcagaaggtgggaattcatcaaaaagtgaatggcattaaagtgattttgacaactcggttgaaacat |
6237613 |
T |
|
| Q |
935 |
gtgtgtcaacaaatgga |
951 |
Q |
| |
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|| ||||| || ||||| |
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| T |
6237612 |
gtatgtcaccagatgga |
6237596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 269 - 330
Target Start/End: Complemental strand, 6101707 - 6101646
Alignment:
| Q |
269 |
agaatccaaacaatttgaatgtatatgattctgaaagtgagattaaacgcttaaaagaagtg |
330 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6101707 |
agaatccaagcaatttgaatgtaagtgattctgaaagtgagattaaacgcttaaaagaagtg |
6101646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 835 - 936
Target Start/End: Complemental strand, 6106445 - 6106344
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
| |
|
|||||||||||||||||||| || || ||||| || |||| |||||||| ||||||||||||||||||||| | ||| | ||||| |||||||||||| |
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| T |
6106445 |
tattttggatgatgtttggaaatatattgatttgcagaaggtaggaattcatccaaaagtgaatggcattaaagtgattctaacaacacgtttgaaacat |
6106346 |
T |
|
| Q |
935 |
gt |
936 |
Q |
| |
|
|| |
|
|
| T |
6106345 |
gt |
6106344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 835 - 951
Target Start/End: Complemental strand, 6180830 - 6180714
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
| |
|
|||||||||||||||||||| || || ||||| | |||| |||||||| |||||||| |||||||||||| | ||| | |||||||||||||||||| |
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| T |
6180830 |
tattttggatgatgtttggaaatatattgatttgaagaaggtgggaattcatccaaaagtaaatggcattaaagtgattctaacaactcgtttgaaacat |
6180731 |
T |
|
| Q |
935 |
gtgtgtcaacaaatgga |
951 |
Q |
| |
|
|| ||||| || ||||| |
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|
| T |
6180730 |
gtatgtcaccagatgga |
6180714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 835 - 951
Target Start/End: Complemental strand, 6247651 - 6247535
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
| |
|
|||||||||||||||||||| || || ||||| | |||| |||||||| |||||||| |||||||||||| | ||| | |||||||||||||||||| |
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| T |
6247651 |
tattttggatgatgtttggaaatatattgatttgaagaaggtgggaattcatccaaaagtaaatggcattaaagtgattctaacaactcgtttgaaacat |
6247552 |
T |
|
| Q |
935 |
gtgtgtcaacaaatgga |
951 |
Q |
| |
|
|| ||||| || ||||| |
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|
| T |
6247551 |
gtatgtcaccagatgga |
6247535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 6102050 - 6101977
Alignment:
| Q |
99 |
tatatgggtttaaccacttttttctgtcttaaatatctttcggataatacctatattttagctacactgaattttta |
175 |
Q |
| |
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||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
6102050 |
tatatggatttaaccacttt---ctctcttaaatatctttcaaataatacctatattttagctacattgaattttta |
6101977 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 835 - 936
Target Start/End: Complemental strand, 6213264 - 6213163
Alignment:
| Q |
835 |
tattttggatgatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacat |
934 |
Q |
| |
|
|||||||||||||||||||| || || ||||| || ||| |||||||| ||| |||| |||||||||||| | |||||||||||||||||| ||||| |
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| T |
6213264 |
tattttggatgatgtttggaaatatattgatttgcagaagttgggaattcatccagaagtaaatggcattaaagtgattttgacaactcgtttggaacat |
6213165 |
T |
|
| Q |
935 |
gt |
936 |
Q |
| |
|
|| |
|
|
| T |
6213164 |
gt |
6213163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 845 - 968
Target Start/End: Complemental strand, 6094631 - 6094506
Alignment:
| Q |
845 |
gatgtttggaggtacatcgattttcaaaaggctggaattcagccaaaagtgaatggcattaaactcattttgacaactcgtttgaaacatgtgtgtcaac |
944 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||| ||||||| | ||| ||||||| |||||| | ||| | |||||||||||||||||||||||||| |
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|
| T |
6094631 |
gatgtttggaaatacattgatttgcaaaaggtgggaattcctctaaatgtgaatgtaattaaagtgattctaacaactcgtttgaaacatgtgtgtcacg |
6094532 |
T |
|
| Q |
945 |
aaatggactgtat--cagatcatatg |
968 |
Q |
| |
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| ||||| ||||| ||||||||||| |
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| T |
6094531 |
agatggattgtatgccagatcatatg |
6094506 |
T |
|
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