View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18136_high_12 (Length: 331)

Name: NF18136_high_12
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18136_high_12
NF18136_high_12
[»] chr6 (1 HSPs)
chr6 (28-314)||(15909163-15909445)
[»] scaffold0690 (1 HSPs)
scaffold0690 (16-314)||(2660-2948)
[»] chr4 (4 HSPs)
chr4 (28-315)||(54005608-54005878)
chr4 (28-115)||(39477967-39478055)
chr4 (251-314)||(39478169-39478234)
chr4 (220-310)||(47561177-47561267)
[»] chr2 (2 HSPs)
chr2 (195-314)||(24773007-24773124)
chr2 (258-315)||(19005099-19005157)
[»] chr7 (2 HSPs)
chr7 (15-120)||(21933792-21933897)
chr7 (23-123)||(8562388-8562488)
[»] chr1 (1 HSPs)
chr1 (119-273)||(15738952-15739103)
[»] chr5 (1 HSPs)
chr5 (251-306)||(17273525-17273580)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 28 - 314
Target Start/End: Original strand, 15909163 - 15909445
Alignment:
Q  28 agagagactgcgaagagggctttcacatcggctatgacaacactgattgggtagcttgaaagtggaatgggcagcgacattaaaagagttgaagagttga 127  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  15909163 agagagactacgaagagggctttcacatcggctatgacaacactgattgggtaacttgaaagtggaatgggcagcgacattaaaagagttgaagagttga 15909262  T
Q  128 agaggaaagttgaagttggaaatggcgtgcgttagaagagcctgggaattaaaaggaagggtcgtggttgagtagtaaagaaggtggaccatttttgtgt 227  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||    ||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  15909263 agaggaaagttgaagttggaaattgcgtgcgttagaagagcttggg----aaaaggaagggtcgtggttgagtagtagagaaggtggaccatttttgtat 15909358  T
Q  228 ttttctttaataaaaaggaatgatttagtaatttccttatagaaaacaattattttgcttttgggtgggtggaccgtggtccacctt 314  Q
    |||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  15909359 ttttctttaataaaaaggaatgttttactaattttcttatagaaaaaaattattttgcttttgggtgggtgggccgtggtccacctt 15909445  T

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Target: scaffold0690 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 314
Target Start/End: Complemental strand, 2948 - 2660
Alignment:
Q  16 agacaaggagtaagagaga--ctgcgaagagggctttcacatcggctatgacaacactgattgggtagcttgaaagtggaatgggcagcgacattaaaag 113  Q
    |||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  2948 agacaaggagtaagagagagactacgaagagggctttcacatcggctatgacaacactgattgggtaacttgaaagtggaatgggcagccacattaaaag 2849  T
Q  114 agttgaagagttgaagaggaaagttgaagttggaaatggcgtgcgttagaagagcctgggaattaaaaggaagggtcgtggttgagtagtaaagaaggtg 213  Q
    ||||||||||        ||||||||||||||||||| | ||||||||||||||||||||||    ||||||||||||||||||||||||| ||||||||    
T  2848 agttgaagag--------gaaagttgaagttggaaattgtgtgcgttagaagagcctgggaa----aaggaagggtcgtggttgagtagtagagaaggtg 2761  T
Q  214 gaccatttttgtgtttttctttaataaaaaggaatgatttagtaatttccttatagaaaacaattattttgcttttgggtgggtggaccgtggtccacct 313  Q
    |||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  2760 gaccatttttgtatttttctttaataaaaaggaatgttttactaattttcttatagaaaaaaattattttgcttttgggtgggtgggccgtggtccacct 2661  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 315
Target Start/End: Original strand, 54005608 - 54005878
Alignment:
Q  28 agagagactgcgaagagggctttcacatcggctatgacaacactgattgggtagcttgaaagtggaatgggcagcgacattaaaagagttgaagagttga 127  Q
    |||||||||  ||||||||||||||| ||| ||||||||||| | ||||| ||| ||||||| |||||||||||||||| || |  |    ||||| |||    
T  54005608 agagagactaagaagagggctttcacctcgactatgacaacaattattgg-tagattgaaagcggaatgggcagcgacaatatataa----aagagctga 54005702  T
Q  128 agaggaaagttgaagttggaaatggcgtgcgttagaagagcctgggaattaaaaggaagggtcgtggttgagtagtaaagaaggtggaccatttttgtgt 227  Q
    ||||| ||||||||||| ||||| | ||||||||||| |  ||| |      ||||||||| ||||    ||| | ||||  ||||||||||||| || |    
T  54005703 agagggaagttgaagtttgaaattgtgtgcgttagaaaaatctgaggg----aaggaagggccgtg----agtgg-aaag--ggtggaccatttt-gtat 54005790  T
Q  228 ttttctttaataaaaaggaatgatttagtaatttccttatagaaaacaattattttgcttttgggtgggtggaccgtggtccaccttg 315  Q
    ||||||||||||  || |  || ||||||||||||||||||| ||| || ||||||||||||||||||||||  ||||| ||||||||    
T  54005791 ttttctttaatagcaaagggtgttttagtaatttccttataggaaaaaaatattttgcttttgggtgggtgggtcgtggcccaccttg 54005878  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 39477967 - 39478055
Alignment:
Q  28 agagagactgcgaagagggcttt-cacatcggctatgacaacactgattgggtagcttgaaagtggaatgggcagcgacattaaaagag 115  Q
    ||||||||| ||||||||||||| ||| || |||||| |||   ||||||||||| ||||||| |||| ||||||||||  ||||||||    
T  39477967 agagagactacgaagagggcttttcacctcagctatggcaatgttgattgggtagattgaaagcggaacgggcagcgacggtaaaagag 39478055  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 39478169 - 39478234
Alignment:
Q  251 tttagtaatttccttatagaaaacaa--ttattttgcttttgggtgggtggaccgtggtccacctt 314  Q
    ||||||||||| ||||||||||| ||  || |||||||||||||||||||| | |||| |||||||    
T  39478169 tttagtaattttcttatagaaaaaaaaattgttttgcttttgggtgggtggtctgtggcccacctt 39478234  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 47561177 - 47561267
Alignment:
Q  220 ttttgtgtttttctttaataaaaaggaatgatttagtaatttccttatagaaaacaattattttgcttttgggtgggtggaccgtggtcca 310  Q
    |||||| |||||||||||||| || || || ||||||| ||||||||| | ||| |||| ||||| |||||| |||||  |||| ||||||    
T  47561177 ttttgtatttttctttaataacaaagagtgttttagtattttccttattggaaaaaattgttttgtttttggatgggtataccgcggtcca 47561267  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 24773124 - 24773007
Alignment:
Q  195 ttgagtagtaaagaaggtggaccatttttgtgtttttctttaataaaaaggaatgatttagtaatttccttatagaaaacaattattttgcttttgggtg 294  Q
    |||||||||  ||| |||| |||||||| || |||| ||||||||| ||||  || |||||| ||||||||||||||||| |||||||||||||||| ||    
T  24773124 ttgagtagtggagagggtgaaccatttt-gtattttcctttaataacaaggggtgttttagtgatttccttatagaaaac-attattttgcttttggatg 24773027  T
Q  295 ggtggaccgtggtccacctt 314  Q
    |||||  |||||||||||||    
T  24773026 ggtgggtcgtggtccacctt 24773007  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 19005157 - 19005099
Alignment:
Q  258 atttccttatag-aaaacaattattttgcttttgggtgggtggaccgtggtccaccttg 315  Q
    |||||||||||| |||| || |||||||||||||||||||||| | |||| ||||||||    
T  19005157 atttccttataggaaaaaaaatattttgcttttgggtgggtgggctgtggcccaccttg 19005099  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 120
Target Start/End: Original strand, 21933792 - 21933897
Alignment:
Q  15 gagacaaggagtaagagagactgcgaagagggctttcacatcggctatgacaacactgattgggtagcttgaaagtggaatgggcagcgacattaaaaga 114  Q
    |||||||||||| ||||||| | |||||||||||||||| |||||||||||||| |  ||||||||  ||||| |||||| || || | ||| |||||||    
T  21933792 gagacaaggagtgagagagattacgaagagggctttcacctcggctatgacaacgccaattgggtaaattgaaggtggaacggacaacaacagtaaaaga 21933891  T
Q  115 gttgaa 120  Q
    | ||||    
T  21933892 gctgaa 21933897  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 8562388 - 8562488
Alignment:
Q  23 gagtaagagagactgcgaagagggctttcacatcggctatgacaacactgattgggtagcttgaaagtggaatgggcagcgacattaaaagagttgaaga 122  Q
    |||| |||||||||||||   |||||||||| ||| |||  ||||||| |||||  ||| | || |||| || ||| |||||||||||||||| ||||||    
T  8562388 gagtgagagagactgcgacaggggctttcacctcgcctacaacaacacggattgaatagatagagagtgaaacgggaagcgacattaaaagagctgaaga 8562487  T
Q  123 g 123  Q
    |    
T  8562488 g 8562488  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 273
Target Start/End: Original strand, 15738952 - 15739103
Alignment:
Q  119 aagagttgaagaggaaagttgaagttggaaatggcgtgcgttagaagagcctgggaattaaaaggaagggtcgtggttgagtagtaaagaaggtggacca 218  Q
    |||||||||||||| || |||||||||||||| ||||||||| ||||||||||       |  ||||||| | || ||||||||| |||| ||||| |||    
T  15738952 aagagttgaagaggtaaattgaagttggaaattgcgtgcgttggaagagcctg-------aggggaagggccatgcttgagtagtgaagagggtgggcca 15739044  T
Q  219 tt----tttgtgtttttctttaataaaaaggaatgatttagtaatttccttatagaaaa 273  Q
    ||    ||||| |||||||||||||| |||   || |||||| ||||||||||||||||    
T  15739045 tttaactttgtatttttctttaataataagtggtgttttagtcatttccttatagaaaa 15739103  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 17273525 - 17273580
Alignment:
Q  251 tttagtaatttccttatagaaaacaattattttgcttttgggtgggtggaccgtgg 306  Q
    ||||||| ||||||||||||||| |||| ||||| ||||||| |||||| ||||||    
T  17273525 tttagtattttccttatagaaaaaaattgttttgtttttgggagggtgggccgtgg 17273580  T

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