View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_high_4 (Length: 590)
Name: NF18136_high_4
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 239 - 574
Target Start/End: Complemental strand, 37064772 - 37064423
Alignment:
| Q |
239 |
cacattctacatttatgaatagtgtgcatttaatctgtaatagaaaaatccttgtaagttgtaacttaacatgctcatcaatcaattaatattactgttt |
338 |
Q |
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| T |
37064772 |
cacattctacatttatgaatagtgtgcatttaatctgtaatagaaaaatccttgtaagttgtaacttaacatgctcatcaatcaattaatattactgttt |
37064673 |
T |
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| Q |
339 |
ggaatttagtaaacaaggttgaattatgcaactgagtgcggtttatctatttcaaaacgattgcgaaatattttaagtgaagatcacgcaaatctataac |
438 |
Q |
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| T |
37064672 |
ggaatttagtaaacaaggttgaattatgcaactgagtgcggtttatctatttcaaaacgattgcgaaatattttaagtgaagatcacgcaaatctataac |
37064573 |
T |
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| Q |
439 |
aactttttagaatgattagaaaact--------------gacaatttagtccaaatactgagaacacatttcaattttgaacccaataaaatccgtttgg |
524 |
Q |
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| T |
37064572 |
aactttctagaatgattagaaaactgagcactctacttggacaatttagtccaaatactgagaacacatttcaattttgaacccaataaaatccgtttgg |
37064473 |
T |
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| Q |
525 |
ccgtctctttcttgcagacaacttaaattgacatttctcgtgtacatatc |
574 |
Q |
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| T |
37064472 |
ccgtctctatcttgctgacaacttaaattgacatttctcgtgtacatatc |
37064423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 37065022 - 37064846
Alignment:
| Q |
1 |
tagaaatattgccttgcaaagtgatgaaaagttgtatattcaactatttaaaaata---aaattttttgttggtatcaattaaaaatttatatgttttac |
97 |
Q |
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| T |
37065022 |
tagaaatattgtgttgcaaagtgatgaaaagttgtatattcaactatttaaaaatattttttttttttgttggtatcaattaaaaatttctatgttttac |
37064923 |
T |
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| Q |
98 |
attattaactagtactacaaagacaccagtatgatcccttataaccacagtaaccggagtactggttagcacgaccc |
174 |
Q |
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| T |
37064922 |
attcttaactaatactataaagacaccagcatgatcccatataaccacggtaacaggagtactggttagcacgaccc |
37064846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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