View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18136_low_10 (Length: 375)
Name: NF18136_low_10
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 32173223 - 32173582
Alignment:
| Q |
1 |
agcagagaatctccaatttcataacctaacgaatgatcggtatcattccatcgcggaacttgatctaatgtcacaacagagtcaccagtgtcatcagtag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32173223 |
agcagagaatctccaatttcataacctaacgactgatcagtatcattccatcgcggaacttgatctaatgtcacaacagagtcaccagtgtcatcagtag |
32173322 |
T |
|
| Q |
101 |
gcaatccaccgcgagctgaaacagctacaggcctatgcattccagtgattctccaattaaacagcactactccacttgttcaaccttcttcaattactat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32173323 |
gcaatccaccgcgagctgaaacagctacaggcctatgcattccagtgattctccaattaaacagcactactccacttgttcaaccttcttcaattactat |
32173422 |
T |
|
| Q |
201 |
gctacatgaattatcaataatctagtattaaattttcgtaagataagctacaattactacttatactaataattataaaaatgatcaaagagaataagat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32173423 |
gctacatgaattatcaataatctagtattaaattttcataagataagctacaattactacttatactaataattataaaaatgatcaaagagaataagat |
32173522 |
T |
|
| Q |
301 |
attgaattaacatataataaaaaacaaacacttcaggtttaagcatataaatcagaaatt |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32173523 |
attgaattaacatataataaaaaacaaacacttcaggtttaagcatataaatcagaaatt |
32173582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University