View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18136_low_11 (Length: 365)

Name: NF18136_low_11
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18136_low_11
NF18136_low_11
[»] chr7 (31 HSPs)
chr7 (177-350)||(30523270-30523443)
chr7 (183-313)||(35747512-35747642)
chr7 (214-347)||(28235885-28236018)
chr7 (214-347)||(21442111-21442244)
chr7 (270-347)||(40061751-40061829)
chr7 (229-340)||(23357432-23357543)
chr7 (270-347)||(30583263-30583341)
chr7 (270-347)||(31620103-31620181)
chr7 (270-350)||(9806014-9806095)
chr7 (210-340)||(46733149-46733279)
chr7 (270-347)||(35669790-35669868)
chr7 (270-340)||(29986508-29986578)
chr7 (270-350)||(3371048-3371129)
chr7 (270-347)||(39869446-39869517)
chr7 (270-329)||(31029891-31029950)
chr7 (270-315)||(37657569-37657615)
chr7 (270-347)||(28493527-28493604)
chr7 (212-313)||(39708667-39708768)
chr7 (270-330)||(41833117-41833178)
chr7 (270-347)||(43338387-43338464)
chr7 (270-315)||(47483425-47483470)
chr7 (270-347)||(48312816-48312893)
chr7 (270-350)||(6244600-6244680)
chr7 (270-313)||(21920232-21920275)
chr7 (210-312)||(44104015-44104118)
chr7 (16-98)||(48058589-48058672)
chr7 (270-340)||(36122068-36122138)
chr7 (267-341)||(43154407-43154481)
chr7 (270-315)||(43467464-43467510)
chr7 (270-350)||(42980359-42980440)
chr7 (270-310)||(48935937-48935977)
[»] chr3 (36 HSPs)
chr3 (180-313)||(42293592-42293725)
chr3 (177-313)||(48104321-48104456)
chr3 (270-347)||(45355641-45355718)
chr3 (212-350)||(44895109-44895247)
chr3 (14-96)||(46358319-46358402)
chr3 (210-350)||(35324226-35324366)
chr3 (270-347)||(38732750-38732828)
chr3 (210-347)||(7475161-7475298)
chr3 (270-350)||(8880129-8880209)
chr3 (270-350)||(26978741-26978821)
chr3 (223-329)||(25164855-25164961)
chr3 (207-297)||(39130087-39130177)
chr3 (270-347)||(35406320-35406397)
chr3 (210-338)||(46115565-46115694)
chr3 (210-338)||(46116232-46116361)
chr3 (270-315)||(55226900-55226945)
chr3 (210-313)||(36807462-36807565)
chr3 (270-350)||(43967133-43967213)
chr3 (214-313)||(47530234-47530333)
chr3 (270-312)||(4071436-4071478)
chr3 (270-315)||(40373964-40374010)
chr3 (270-347)||(2557155-2557232)
chr3 (270-347)||(34435272-34435349)
chr3 (270-347)||(36238611-36238688)
chr3 (270-347)||(41990935-41991012)
chr3 (270-347)||(52184286-52184363)
chr3 (270-347)||(6586869-6586940)
chr3 (270-350)||(19275812-19275892)
chr3 (210-313)||(32389572-32389675)
chr3 (270-313)||(46668938-46668982)
chr3 (256-328)||(47133475-47133547)
chr3 (270-340)||(12765216-12765287)
chr3 (270-331)||(32999104-32999166)
chr3 (270-315)||(36659598-36659644)
chr3 (270-318)||(32111008-32111057)
chr3 (64-100)||(1652870-1652906)
[»] chr2 (23 HSPs)
chr2 (177-313)||(28124348-28124483)
chr2 (208-336)||(10362550-10362678)
chr2 (14-100)||(27880064-27880149)
chr2 (270-347)||(18109134-18109212)
chr2 (290-347)||(38245356-38245413)
chr2 (224-340)||(3199283-3199399)
chr2 (270-336)||(26339443-26339510)
chr2 (270-340)||(3148027-3148097)
chr2 (210-315)||(7453966-7454071)
chr2 (270-347)||(42097385-42097463)
chr2 (177-217)||(10362007-10362047)
chr2 (210-313)||(11447777-11447881)
chr2 (210-308)||(32481707-32481805)
chr2 (270-316)||(40861655-40861702)
chr2 (229-347)||(10034326-10034444)
chr2 (210-315)||(39532597-39532702)
chr2 (270-330)||(8340586-8340647)
chr2 (223-312)||(43496765-43496854)
chr2 (214-313)||(6432939-6433038)
chr2 (210-315)||(1086573-1086678)
chr2 (24-100)||(22885076-22885153)
chr2 (270-347)||(36985923-36986000)
chr2 (207-296)||(38927770-38927859)
[»] chr4 (30 HSPs)
chr4 (182-315)||(34440033-34440165)
chr4 (190-313)||(33434284-33434406)
chr4 (178-306)||(45619880-45620009)
chr4 (229-347)||(2389737-2389855)
chr4 (270-347)||(45550246-45550324)
chr4 (270-350)||(1771092-1771173)
chr4 (270-347)||(19914171-19914249)
chr4 (210-347)||(28460149-28460286)
chr4 (270-347)||(30410673-30410751)
chr4 (183-313)||(44587645-44587776)
chr4 (229-347)||(36180657-36180775)
chr4 (270-342)||(51930210-51930283)
chr4 (216-298)||(20987548-20987631)
chr4 (210-324)||(52575443-52575557)
chr4 (270-347)||(39839417-39839494)
chr4 (208-308)||(26920154-26920254)
chr4 (270-350)||(37113644-37113724)
chr4 (270-340)||(25697556-25697627)
chr4 (270-313)||(40686387-40686430)
chr4 (270-315)||(30654100-30654146)
chr4 (221-331)||(32013068-32013178)
chr4 (229-347)||(53284690-53284808)
chr4 (270-331)||(28779168-28779229)
chr4 (224-313)||(45109071-45109160)
chr4 (270-340)||(31998424-31998495)
chr4 (270-340)||(19801125-19801195)
chr4 (270-312)||(54687496-54687538)
chr4 (302-347)||(19802603-19802648)
chr4 (210-315)||(20530458-20530563)
chr4 (270-331)||(49334492-49334553)
[»] chr8 (36 HSPs)
chr8 (177-290)||(41788233-41788345)
chr8 (224-350)||(5964647-5964773)
chr8 (224-347)||(34618442-34618565)
chr8 (270-350)||(5838988-5839068)
chr8 (223-347)||(32175678-32175802)
chr8 (203-331)||(34900207-34900335)
chr8 (270-347)||(18146938-18147016)
chr8 (270-331)||(12209410-12209472)
chr8 (270-331)||(12453838-12453900)
chr8 (210-347)||(45237191-45237329)
chr8 (210-315)||(35011082-35011187)
chr8 (287-347)||(7303937-7303997)
chr8 (270-350)||(14912489-14912569)
chr8 (270-329)||(40532614-40532674)
chr8 (270-340)||(4477049-4477120)
chr8 (229-315)||(45069270-45069356)
chr8 (229-328)||(45236246-45236345)
chr8 (270-347)||(3513062-3513140)
chr8 (273-347)||(17155306-17155380)
chr8 (277-331)||(21266297-21266351)
chr8 (270-347)||(24803931-24804008)
chr8 (229-315)||(36049526-36049612)
chr8 (16-100)||(17720641-17720726)
chr8 (270-315)||(35056746-35056791)
chr8 (210-314)||(43874487-43874591)
chr8 (210-313)||(31719379-31719483)
chr8 (210-313)||(35252499-35252603)
chr8 (270-313)||(39103630-39103674)
chr8 (270-333)||(42803825-42803889)
chr8 (273-340)||(16788335-16788402)
chr8 (64-99)||(32945687-32945722)
chr8 (210-315)||(29050611-29050717)
chr8 (270-315)||(41356876-41356922)
chr8 (270-347)||(35397310-35397387)
chr8 (317-350)||(39103607-39103640)
chr8 (270-350)||(20696634-20696714)
[»] chr1 (27 HSPs)
chr1 (183-309)||(8850310-8850436)
chr1 (270-347)||(4513636-4513714)
chr1 (219-345)||(1533046-1533171)
chr1 (210-347)||(27668182-27668319)
chr1 (270-347)||(31656951-31657029)
chr1 (235-347)||(18034194-18034306)
chr1 (210-343)||(38667723-38667856)
chr1 (270-337)||(18544718-18544786)
chr1 (210-347)||(3795385-3795522)
chr1 (270-340)||(25366364-25366434)
chr1 (261-347)||(39447861-39447947)
chr1 (270-347)||(3569660-3569737)
chr1 (264-315)||(5699100-5699152)
chr1 (270-315)||(9224438-9224484)
chr1 (270-350)||(12769869-12769949)
chr1 (270-313)||(35180414-35180458)
chr1 (270-347)||(42627669-42627740)
chr1 (270-347)||(14391016-14391094)
chr1 (270-315)||(20470195-20470241)
chr1 (270-340)||(33077164-33077234)
chr1 (270-315)||(39324971-39325017)
chr1 (270-347)||(1189402-1189479)
chr1 (270-347)||(27748327-27748404)
chr1 (270-347)||(39326336-39326413)
chr1 (270-347)||(45900859-45900936)
chr1 (272-347)||(5675226-5675302)
chr1 (270-350)||(46311951-46312031)
[»] chr6 (14 HSPs)
chr6 (210-347)||(21527515-21527652)
chr6 (270-347)||(18802304-18802382)
chr6 (207-289)||(13867298-13867380)
chr6 (210-347)||(1790324-1790454)
chr6 (210-313)||(31603371-31603475)
chr6 (229-315)||(4977076-4977162)
chr6 (217-347)||(32560585-32560715)
chr6 (270-331)||(25022259-25022320)
chr6 (270-350)||(24118477-24118557)
chr6 (270-340)||(22708044-22708114)
chr6 (270-315)||(31259009-31259055)
chr6 (270-331)||(32986247-32986308)
chr6 (270-346)||(12131226-12131302)
chr6 (270-326)||(13755610-13755666)
[»] chr5 (19 HSPs)
chr5 (214-347)||(5049476-5049609)
chr5 (270-347)||(13019588-13019666)
chr5 (210-347)||(20768293-20768430)
chr5 (229-347)||(7947837-7947955)
chr5 (214-325)||(43347775-43347886)
chr5 (270-340)||(3704038-3704108)
chr5 (229-347)||(41733569-41733687)
chr5 (270-331)||(17645919-17645980)
chr5 (212-315)||(1924449-1924552)
chr5 (270-350)||(27812306-27812386)
chr5 (207-298)||(3034040-3034131)
chr5 (270-347)||(29524620-29524697)
chr5 (270-347)||(36761876-36761953)
chr5 (221-315)||(2890391-2890485)
chr5 (270-340)||(22777939-22778009)
chr5 (270-340)||(34589186-34589256)
chr5 (270-347)||(15499402-15499479)
chr5 (270-347)||(37530001-37530078)
chr5 (303-347)||(7156741-7156785)
[»] scaffold0039 (1 HSPs)
scaffold0039 (256-341)||(76876-76961)
[»] scaffold1903 (1 HSPs)
scaffold1903 (270-316)||(4-51)
[»] scaffold0464 (1 HSPs)
scaffold0464 (270-347)||(5392-5469)
[»] scaffold0330 (1 HSPs)
scaffold0330 (229-347)||(7704-7822)
[»] scaffold0115 (1 HSPs)
scaffold0115 (270-315)||(14297-14343)
[»] scaffold0067 (1 HSPs)
scaffold0067 (270-311)||(34279-34320)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 177 - 350
Target Start/End: Complemental strand, 30523443 - 30523270
Alignment:
Q  177 ggtgaaaaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttacc 276  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||  ||||||||||    
T  30523443 ggtgaaaaaaatgtttatacatataacttatataaattaaacatacatgtactttcatgtcatttcatatttattaattacttaaaaagctagttttacc 30523344  T
Q  277 aaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    |||||||||||||||||||| |||| |||||||||||||  |||||||| |||||||||| ||||||| |||||    
T  30523343 aaacactttaatttcaatcaactaaattttcagctataagctttcagctttcagccatcaactatcagttaact 30523270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 183 - 313
Target Start/End: Original strand, 35747512 - 35747642
Alignment:
Q  183 aaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacac 282  Q
    |||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||| |||| || ||||||||||||||    
T  35747512 aaaaatgtttatacatataacttatataaattaaacatacatatacttttatgtcatttcatatttattaattacttcaaaagttggttttaccaaacac 35747611  T
Q  283 tttaatttcaatcagctaacttttcagctat 313  Q
    ||||||||||||||||||| |||||||||||    
T  35747612 tttaatttcaatcagctaatttttcagctat 35747642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 214 - 347
Target Start/End: Original strand, 28235885 - 28236018
Alignment:
Q  214 taaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    ||||||||||||||||||||||||||||   | |||||| | | || |||| ||| |||||||||||||||||||||||| |||||| |||||||||||     
T  28235885 taaacatacatgtatttttatgtcattttaaacttattactcattttaaaagttaattttaccaaacactttaatttcaaacagctagcttttcagctaa 28235984  T
Q  314 aaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||||||| |||||||||| |||||    
T  28235985 aaattttcagctatcagtcatcagctataagcta 28236018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 214 - 347
Target Start/End: Complemental strand, 21442244 - 21442111
Alignment:
Q  214 taaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    ||||||||||| || |||||||||||||   | |||||| | | || |||| ||| |||||||||||||||||||||||| || ||| |||||||||||     
T  21442244 taaacatacatatacttttatgtcattttaaacttattattcattttaaaagttaattttaccaaacactttaatttcaaacatctagcttttcagctaa 21442145  T
Q  314 aaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||||||| |||||||||| |||||    
T  21442144 aaattttcagctatcagtcatcagctataagcta 21442111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 40061751 - 40061829
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||||||||||||||||| |||||    
T  40061751 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcagccatcagctataagcta 40061829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 229 - 340
Target Start/End: Complemental strand, 23357543 - 23357432
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctat 327  Q
    |||||||||||||  ||||||| | | |||| || | ||| |||||||||||| ||| ||||| |||||||||||||||||||||||| || ||||||||    
T  23357543 ttttatgtcattttatatttat-agtcactttaacagttaattttaccaaacatttttaattttaatcagctaacttttcagctataagttatcagctat 23357445  T
Q  328 cagccatcagcta 340  Q
    |||||||||||||    
T  23357444 cagccatcagcta 23357432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 30583263 - 30583341
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||||| ||||||||||| |||||    
T  30583263 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcaaccatcagctataagcta 30583341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 31620103 - 31620181
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||| |||||||| ||||| ||||||||||||||||||||||||  | ||| ||||||||||||||||||||||||    
T  31620103 ttttacccaacacttttaattttaatcagctaacttttcagctataagctatcaactatcagccatcagctatcagcta 31620181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 9806095 - 9806014
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||| |||||||| |||| ||||||||    
T  9806095 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctattagccatcaactataagctaact 9806014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 340
Target Start/End: Original strand, 46733149 - 46733279
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    |||||||||| ||||||  |||||||||||||  ||||||| | | |||| || |  || |||||||||||||||| ||||| |||||||||||||||||    
T  46733149 aaattaaacaaacatgtccttttatgtcattttatatttat-agtcacttcaacagctaattttaccaaacacttttaattttaatcagctaacttttca 46733247  T
Q  309 gctataaattttcagctatcagccatcagcta 340  Q
     ||||||  | | |||||||||||||||||||    
T  46733248 actataagctataagctatcagccatcagcta 46733279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 35669868 - 35669790
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||  | ||| |||||||||||||||||| |||||    
T  35669868 ttttaccaaacacttttaattttaatcagctaacttttcaactataagctatcaactatcagccatcagctataagcta 35669790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 29986508 - 29986578
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||||||||||||||||| |||  |||||||| ||||| ||  |||||||||| ||||||||    
T  29986508 ttttaccaaacactttaatttcaatcaactagtttttcagccataaacttcaagctatcagctatcagcta 29986578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 3371048 - 3371129
Alignment:
Q  270 ttttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||||||  |||| ||| ||||||||||||||||||||  | ||||| ||||| ||||||||| |||||||||    
T  3371048 ttttaccaaacactttttattttaataagctaacttttcagctataagctatcagccatcagtcatcagctaccagctaact 3371129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 39869517 - 39869446
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||       |||||||||||||||||||| |||||    
T  39869517 ttttaccaaacacttttaattttaatcagctaacttttcagctata-------agctatcagccatcagctataagcta 39869446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 329
Target Start/End: Complemental strand, 31029950 - 31029891
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatca 329  Q
    ||||| |||||||||| | || ||||||||||||||||||||||||| | ||||||||||    
T  31029950 ttttatcaaacacttttaatttaatcagctaacttttcagctataaactatcagctatca 31029891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 37657615 - 37657569
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  37657615 ttttaccaaacacttttaattttaatcagctaacttttcagctataa 37657569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 28493604 - 28493527
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||||| | |||||||||||||    
T  28493604 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagctaccagctatcagcta 28493527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 39708768 - 39708667
Alignment:
Q  212 attaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagct 311  Q
    |||||||||| ||||| ||||| |||||||  ||||| ||||| |||| ||||  |  ||||||||| ||||||||||| ||||| | | ||||||||||    
T  39708768 attaaacatatatgtacttttaagtcattttatatttgttaataacttcaaaagctcattttaccaagcactttaatttaaatcaacaagcttttcagct 39708669  T
Q  312 at 313  Q
    ||    
T  39708668 at 39708667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 41833178 - 41833117
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcag 330  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||| | ||||| |||||    
T  41833178 ttttaccaaacacttttaattttaatcagctaatttttcagctataaactatcagccatcag 41833117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 43338387 - 43338464
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||||||||||| ||||||||| ||||||    
T  43338387 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagtcatcagctaccagcta 43338464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 47483425 - 47483470
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataa 315  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  47483425 ttttaccaaacactttaatttcaatcaactagcttttcagccataa 47483470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 48312893 - 48312816
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | | ||||||||| ||||||||||||||||    
T  48312893 ttttaccaaacacattatttttaataagcaagcttttcagctataagctattagctatcagtcatcagctatcagcta 48312816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 6244600 - 6244680
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||||||||||| ||||| |||||| ||||||    
T  6244600 ttttaccaaacacattatttttaataagcaagcttttcagctataagatatcagctatcagtcatcaactatcaactaact 6244680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 21920275 - 21920232
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    ||||||||||||||||||||| ||| || |||||||||||||||    
T  21920275 ttttaccaaacactttaattttaataagttaacttttcagctat 21920232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 44104118 - 44104015
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacac-tttaatttcaatcagctaacttttca 308  Q
    |||||||||| ||||||  |||||||||||||  ||||||| | | |||| | ||  || ||||||||||||| |||||||| ||| || ||||||||||    
T  44104118 aaattaaacaaacatgtccttttatgtcattttatatttatcagtcacttcagaagctaattttaccaaacacttttaattttaattagttaacttttca 44104019  T
Q  309 gcta 312  Q
    ||||    
T  44104018 gcta 44104015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 48058589 - 48058672
Alignment:
Q  16 tattctcaagatcaatcagccttcaccacctctcatcctcca-atcactgaaagaacatcaaaacagcccaaaaccaaacttga 98  Q
    |||||| ||||||||||||| | ||||||||| || |||||| | ||| ||||||||| || || || ||||||||||||||||    
T  48058589 tattctaaagatcaatcagcttccaccacctcacaacctccagaccaccgaaagaacaacataaaaggccaaaaccaaacttga 48058672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 36122068 - 36122138
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||||||||||| ||| | |||  |||||||||||||  | ||||||||||  |||||||||    
T  36122068 ttttaccaaacactttaattttaataaactagtttttcagctataagctatcagctatcaaacatcagcta 36122138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 43154481 - 43154407
Alignment:
Q  267 tagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctat 341  Q
    |||||||||||||||| ||| ||| ||| ||| | ||||||| |||||| || ||||||||| | ||||||||||    
T  43154481 tagttttaccaaacacattatttttaataagcgagcttttcaactataagttatcagctatccgtcatcagctat 43154407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 43467510 - 43467464
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  43467510 ttttacgaaacacttttaattttaatcagctaacttttcagctataa 43467464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 42980440 - 42980359
Alignment:
Q  270 ttttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||||||  || | ||| ||||||||||||||||||||  | ||| ||||||| |||||||||| || |||||    
T  42980440 ttttaccaaacactttttatgttaataagctaacttttcagctataagctatcaactatcagtcatcagctataagttaact 42980359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 48935937 - 48935977
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagc 310  Q
    |||||||||||||||||||||||| || |||| ||||||||    
T  48935937 ttttaccaaacactttaatttcaaacaactaatttttcagc 48935977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 180 - 313
Target Start/End: Original strand, 42293592 - 42293725
Alignment:
Q  180 gaaaaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaa 279  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||  |||||||| ||||    
T  42293592 gaaaaaaatgtttatacatataacttatataaattaaacatacatgtacttttatgtcatttcatatttattaattacttaaaaagctagttttatcaaa 42293691  T
Q  280 cactttaatttcaatcagctaacttttcagctat 313  Q
    ||||||||||||||||||||||||||||||||||    
T  42293692 cactttaatttcaatcagctaacttttcagctat 42293725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 48104456 - 48104321
Alignment:
Q  177 ggtgaaaaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttacc 276  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||| ||||||||||    
T  48104456 ggtgaaaaaaatgtttatacatataacttatataaattaaacatacacgtatttt-atgtcatttcatatttattaattacttaaaaaactagttttacc 48104358  T
Q  277 aaacactttaatttcaatcagctaacttttcagctat 313  Q
    ||||||||||||||||||||| || ||||||||||||    
T  48104357 aaacactttaatttcaatcagttagcttttcagctat 48104321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 45355641 - 45355718
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||    
T  45355641 ttttaccaaatactttaatttcaatcagctaacttttcagctataagctttcagctatcagccatcagctataagcta 45355718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 350
Target Start/End: Complemental strand, 44895247 - 44895109
Alignment:
Q  212 attaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagct 311  Q
    |||||||||| ||||| ||||| |||||||  ||||||||| ||  || |||| ||| |||||||||||||||||||||  || | | |  |||||||||    
T  44895247 attaaacatatatgtacttttaagtcattttatatttattagtttattcaaaagttaattttaccaaacactttaatttagattaacaagtttttcagct 44895148  T
Q  312 ataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||  |||||||||||||||||||||||| ||||||||    
T  44895147 ataagctttcagctatcagccatcagctataagctaact 44895109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 14 - 96
Target Start/End: Original strand, 46358319 - 46358402
Alignment:
Q  14 attattctcaagatcaatcagccttcaccacctctcatcctccaatc-actgaaagaacatcaaaacagcccaaaaccaaactt 96  Q
    ||||||| |||||||||| ||| | |||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||    
T  46358319 attattcccaagatcaataagcttccaccacctctcaacctccaatccactgaaagaacatcaaaacagcccaaagccaaactt 46358402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 350
Target Start/End: Complemental strand, 35324366 - 35324226
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| | | |||| || || || |||||||||||||||| ||||| |||||||||||||||||    
T  35324366 aaattaaacaagcatgtccttttatgtcattttatatttat-agtcacttcaacaactaattttaccaaacacttttaattttaatcagctaacttttca 35324268  T
Q  309 gctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||| |  | ||||| |||||||||||||||| ||||||||    
T  35324267 gctatcagctatcagccatcagccatcagctataagctaact 35324226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 38732750 - 38732828
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||| ||||||||||||||||| |||||    
T  38732750 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagttatcagccatcagctataagcta 38732828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 7475298 - 7475161
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    |||||||||| ||||||  |||||||||||||  ||||||| | | |||| |||||  | |||||| ||||||||| ||||| |||||||||||||||||    
T  7475298 aaattaaacaaacatgttcttttatgtcattttatatttat-agtcacttcaaaaacaaattttactaaacacttttaattttaatcagctaacttttca 7475200  T
Q  309 gctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||  | || | |||| |||||||||||| |||||    
T  7475199 gctataagctatccgttatctgccatcagctataagcta 7475161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 8880129 - 8880209
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||||||||||| |||||||||||||||||||    
T  8880129 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagtcatcagctatcagctaact 8880209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 26978821 - 26978741
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||||||||||||||||| |||| |||||| ||||||  ||||| ||| ||| ||||| |||| ||||||||    
T  26978821 ttttaccaaacactttaatttcaatcaactaatttttcaactataagctttcaactaccagtcatcacctataagctaact 26978741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 329
Target Start/End: Complemental strand, 25164961 - 25164855
Alignment:
Q  223 atgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttca 322  Q
    ||||| ||||| |||||||  ||||||| | | |||| || ||||| ||||| ||||||||||||||| ||| ||  ||||||| |||||||| ||||||    
T  25164961 atgtacttttacgtcatttgatatttatcagtcactttaacaattaattttatcaaacactttaattttaataagtcaactttttagctataagttttca 25164862  T
Q  323 gctatca 329  Q
    |||||||    
T  25164861 gctatca 25164855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 297
Target Start/End: Original strand, 39130087 - 39130177
Alignment:
Q  207 tataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcag 297  Q
    ||||||||||||||| ||||| ||||| |||||||  | ||||||| | |||| ||||  ||| |||||||||||||||||||| ||||||    
T  39130087 tataaattaaacatatatgtacttttaagtcattttgtgtttattagtaacttcaaaagctagctttaccaaacactttaatttaaatcag 39130177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 35406320 - 35406397
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||| | ||| ||||||| ||||||||||||||||    
T  35406320 ttttaccaaacacattatttttaataagcaagcttttcagctataaactatcaactatcagtcatcagctatcagcta 35406397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 338
Target Start/End: Original strand, 46115565 - 46115694
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| | | |||| || |  || |||||||||||||||| ||||| ||| |||||||||||||    
T  46115565 aaattaaacaagcatgtccttttatgtcattttatatttatcagtcacttcaacagctaattttaccaaacacttttaattttaataagctaacttttca 46115664  T
Q  309 gctataaattttcagctatcagccatcagc 338  Q
    |||||||  |  ||||||| ||||||||||    
T  46115665 gctataagctaccagctattagccatcagc 46115694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 338
Target Start/End: Original strand, 46116232 - 46116361
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| | | |||| || |  || |||||||||||||||| ||||| ||| |||||||||||||    
T  46116232 aaattaaacaagcatgtccttttatgtcattttatatttatcagtcacttcaacagctaattttaccaaacacttttaattttaataagctaacttttca 46116331  T
Q  309 gctataaattttcagctatcagccatcagc 338  Q
    |||||||  |  ||||||| ||||||||||    
T  46116332 gctataagctaccagctattagccatcagc 46116361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 55226900 - 55226945
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataa 315  Q
    ||||||||||||||||||||||||||| ||||||||||||| ||||    
T  55226900 ttttaccaaacactttaatttcaatcaactaacttttcagccataa 55226945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 36807462 - 36807565
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| | | |||| || || || |||||||||||||||| ||||| |||||||||||||||||    
T  36807462 aaattaaacaagcatgtccttttatgtcattttatatttat-agtcacttcaacaactaattttaccaaacacttttaattttaatcagctaacttttca 36807560  T
Q  309 gctat 313  Q
    |||||    
T  36807561 gctat 36807565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 43967213 - 43967133
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    |||||||||||||||||| ||||| ||  ||  |||||||||||||||||| | ||||||| |||||||||| | ||||||    
T  43967213 ttttaccaaacactttaacttcaaacaattagtttttcagctataaattttaaactatcagtcatcagctataatctaact 43967133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 214 - 313
Target Start/End: Complemental strand, 47530333 - 47530234
Alignment:
Q  214 taaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    ||||||| | |||| | ||| |||||||  ||||||| | ||||||| ||| ||| |||||||||||| |||||||| ||||||||| ||||||| ||||    
T  47530333 taaacattcttgtactcttacgtcattttatatttatcacttacttagaaagttaattttaccaaacattttaattttaatcagctaccttttcacctat 47530234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 4071436 - 4071478
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagcta 312  Q
    ||||||||||||||||||||| ||| |||||||||||||||||    
T  4071436 ttttaccaaacactttaattttaataagctaacttttcagcta 4071478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 40374010 - 40373964
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  40374010 ttttaccaaacacttttaattttaatcagctaacttttcagctataa 40373964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 2557232 - 2557155
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||| ||||||| ||| ||| ||| ||| | ||||||||||||||  | ||||||||||| ||||||||||||||||    
T  2557232 ttttatcaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagtcatcagctatcagcta 2557155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 34435349 - 34435272
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||||| | |||||||||||||    
T  34435349 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagctaccagctatcagcta 34435272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 36238611 - 36238688
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||| ||||||| ||||||||||||||||    
T  36238611 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcaactatcagtcatcagctatcagcta 36238688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 41991012 - 41990935
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||||| | |||||||||||||    
T  41991012 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagctaccagctatcagcta 41990935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 52184363 - 52184286
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | |||||||||||||| || |||| |||||| ||| ||||||||||||    
T  52184363 ttttaccaaacacgttatttttaataagcaagcttttcagctataagttatcagatatcagtcattagctatcagcta 52184286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 6586869 - 6586940
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||| |||||||| ||||| |||||||||||||||||||||       |||||||||||||||||||||| |||||    
T  6586869 ttttaccgaacacttttaattttaatcagctaacttttcagcta-------tcagctatcagccatcagctataagcta 6586940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 19275812 - 19275892
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||| ||||||  | ||||||||| | |||||||||||||||||||    
T  19275812 ttttaccaaacacattatttttaataagcaagcttttcaactataagctatcagctatccgtcatcagctatcagctaact 19275892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 32389675 - 32389572
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| | | |||| || | ||| ||||||| |||||||| ||||| |||||||||||||||||    
T  32389675 aaattaaacaagcatgtccttttatgtcattttatatttat-agtcacttcaacagttaattttaccgaacacttttaattttaatcagctaacttttca 32389577  T
Q  309 gctat 313  Q
    |||||    
T  32389576 gctat 32389572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 46668938 - 46668982
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctat 313  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  46668938 ttttaccaaacacttttaattttaatcagctaacttttcagctat 46668982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 328
Target Start/End: Original strand, 47133475 - 47133547
Alignment:
Q  256 acttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatc 328  Q
    |||| ||||| || |||||||||||||||||||||  ||||| || ||||||||||||||  || ||||||||    
T  47133475 acttcaaaaactaattttaccaaacactttaattttcatcagttagcttttcagctataagcttgcagctatc 47133547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 12765216 - 12765287
Alignment:
Q  270 ttttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||||||  |||| ||| ||||||||||||||||||||| | ||||| |||||| | ||||||    
T  12765216 ttttaccaaacactttttattttaataagctaacttttcagctataaactatcagccatcagctaccagcta 12765287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 32999166 - 32999104
Alignment:
Q  270 ttttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    ||||||||||||||||  |||| ||| ||||||||||||||||||||| | ||||| ||||||    
T  32999166 ttttaccaaacactttttattttaataagctaacttttcagctataaactatcagccatcagc 32999104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 36659644 - 36659598
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| |||||||||||||||||| |||||    
T  36659644 ttttaccaaacacttttaattttaatcagctaacttttcagttataa 36659598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 318
Target Start/End: Complemental strand, 32111057 - 32111008
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaatt 318  Q
    ||||| |||||||||| ||||| |||||||||||||||||||||| ||||    
T  32111057 ttttatcaaacacttttaattttaatcagctaacttttcagctatcaatt 32111008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 1652870 - 1652906
Alignment:
Q  64 gaaagaacatcaaaacagcccaaaaccaaacttgaac 100  Q
    ||||||||| ||||| |||||||||||||||||||||    
T  1652870 gaaagaacaccaaaaaagcccaaaaccaaacttgaac 1652906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 177 - 313
Target Start/End: Complemental strand, 28124483 - 28124348
Alignment:
Q  177 ggtgaaaaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttacc 276  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||| |||||||||||    
T  28124483 ggtgaaaaaa-tgtgtatacatataacttatataaattaaacatacgtgtacttttatgtcatttcatatttactaattacttaaaaagttagttttacc 28124385  T
Q  277 aaacactttaatttcaatcagctaacttttcagctat 313  Q
    |||||||||||||||||||||||||||||||||||||    
T  28124384 aaacactttaatttcaatcagctaacttttcagctat 28124348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 208 - 336
Target Start/End: Original strand, 10362550 - 10362678
Alignment:
Q  208 ataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttc 307  Q
    |||||||||||||||| ||| |||||||||||||| ||| ||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  10362550 ataaattaaacatacacgtacttttatgtcatttcatatatattagttacttaaagagttagttttaccaaacactttaatttcaatcagctaacttttc 10362649  T
Q  308 agctataaattttcagctatcagccatca 336  Q
    || ||||| |||||||| |||||| ||||    
T  10362650 aggtataagttttcagccatcagctatca 10362678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 27880064 - 27880149
Alignment:
Q  14 attattctcaagatcaatcagccttcaccacctctcatcctccaatcactgaaagaacatcaaaacagcccaaaaccaaacttgaac 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||  |||| ||||||||| ||||||||||| |||||||||||||||    
T  27880064 attattctcaagatcaatcagctttcaccacctctcatcctccggtcaccgaaagaacaacaaaacagccc-aaaccaaacttgaac 27880149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 18109212 - 18109134
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||||||||||||||||| |||||    
T  18109212 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcagccatcagctataagcta 18109134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 38245413 - 38245356
Alignment:
Q  290 tcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||||| |||||    
T  38245413 tcaatcagctaacttttcagctataagctttcagttatcagccatcagctataagcta 38245356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 224 - 340
Target Start/End: Complemental strand, 3199399 - 3199283
Alignment:
Q  224 tgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcag 323  Q
    |||||||||  |||||||  ||||||| | | ||||||||  ||| |||||| ||||| |||||||| ||||| ||| ||||||||||||||  || |||    
T  3199399 tgtatttttccgtcattttatatttatgagtcacttaaaacgttaattttactaaacattttaattttaatcaactagcttttcagctataagcttccag 3199300  T
Q  324 ctatcagccatcagcta 340  Q
    |||||||| ||||||||    
T  3199299 ctatcagctatcagcta 3199283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 26339510 - 26339443
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatca 336  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | | |||||||||||||||    
T  26339510 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctattagctatcagccatca 26339443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 3148027 - 3148097
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||  || || |||||||| ||||||||    
T  3148027 ttttaccaaacactttaatttcaatcaactagcttttcagccataagcttccaactatcagctatcagcta 3148097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 7454071 - 7453966
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  ||||| ||||||||||||||  ||||||| | | |||| || |  || |||||||||||||||| ||||| |||||||||||||||||    
T  7454071 aaattaaacaagcatgtctttttatgtcattttatatttat-agtcacttcaacagctaattttaccaaacacttttaattttaatcagctaacttttca 7453973  T
Q  309 gctataa 315  Q
    |||||||    
T  7453972 gctataa 7453966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 42097463 - 42097385
Alignment:
Q  270 ttttaccaaacac-tttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| |||| ||| ||||||||||||||||||||  | ||||||||| ||||||||||| ||||||    
T  42097463 ttttaccaaacacattttattttaataagctaacttttcagctataagctatcagctatctgccatcagctaccagcta 42097385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 177 - 217
Target Start/End: Original strand, 10362007 - 10362047
Alignment:
Q  177 ggtgaaaaaagtgtttatacatataacttatataaattaaa 217  Q
    |||||||||| ||||||||||||||||||||||||||||||    
T  10362007 ggtgaaaaaaatgtttatacatataacttatataaattaaa 10362047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 11447777 - 11447881
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacac-tttaatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| ||  |||| || | ||| ||||||||||||| |||||||| ||| |||||||||||||    
T  11447777 aaattaaacaagcatgtccttttatgtcattttatatttatcaaccacttcaacagttaattttaccaaacacttttaattttaataagctaacttttca 11447876  T
Q  309 gctat 313  Q
    |||||    
T  11447877 gctat 11447881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 308
Target Start/End: Complemental strand, 32481805 - 32481707
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| ||| |||| || || || |||||||||||||||| ||||| |||||||||||||||||    
T  32481805 aaattaaacaagcatgtccttttatgtcattttatatttat-aatcacttcaacaactaattttaccaaacacttttaattttaatcagctaacttttca 32481707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 40861702 - 40861655
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaa 316  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  40861702 ttttaccaaacacttttaattttaatcagctaacttttcagctataaa 40861655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 347
Target Start/End: Original strand, 10034326 - 10034444
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatc 328  Q
    |||||||||||||  || |||| ||  |||| || || || ||||||||||||| ||| ||| ||| ||| |  |||||||||||||| | | |||||||    
T  10034326 ttttatgtcattttatacttatcaaccacttcaacaactaattttaccaaacacattatttttaataagcaagtttttcagctataaactattagctatc 10034425  T
Q  329 agccatcagctatcagcta 347  Q
    || ||||||||||||||||    
T  10034426 agtcatcagctatcagcta 10034444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 315
Target Start/End: Original strand, 39532597 - 39532702
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  ||||| |||||||| |||||  ||||||| | | |||| || || || |||||||||||||||| ||||| ||||| |||||||||||    
T  39532597 aaattaaacaagcatgtctttttatgccattttatatttat-agtcacttcaacaactaattttaccaaacacttttaattttaatcaactaacttttca 39532695  T
Q  309 gctataa 315  Q
    |||||||    
T  39532696 gctataa 39532702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 330
Target Start/End: Complemental strand, 8340647 - 8340586
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcag 330  Q
    |||||||||||||||| ||||| ||| |||||||||||||| |||||| | |||||||||||    
T  8340647 ttttaccaaacacttttaattttaataagctaacttttcagttataaactatcagctatcag 8340586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 43496765 - 43496854
Alignment:
Q  223 atgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagcta 312  Q
    ||||||||||||||||||   || |||| | | | || |||||||| |||||| ||||||||||||||||| | |||| |||||||||||    
T  43496765 atgtatttttatgtcattatatacttatcactcattttaaaaattaattttacaaaacactttaatttcaaaccgctagcttttcagcta 43496854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 214 - 313
Target Start/End: Original strand, 6432939 - 6433038
Alignment:
Q  214 taaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    |||||| | ||||| |||||||||||||  ||||||| ||| | || || || || |||||||||||| |||||||| ||| || || ||||||||||||    
T  6432939 taaacaaatatgtacttttatgtcattttatatttatcaatcatttcaacaactaattttaccaaacattttaattttaataagttagcttttcagctat 6433038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 315
Target Start/End: Original strand, 1086573 - 1086678
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcag 309  Q
    |||||||||| ||| ||  ||||| |||||||  ||||||| | | |||| || || || |||||||||||||||| | || ||| |||||||||||||     
T  1086573 aaattaaacaaacacgtccttttacgtcatttaatatttatcagtcacttcaacaactaattttaccaaacacttttaatttaataagctaacttttcaa 1086672  T
Q  310 ctataa 315  Q
    ||||||    
T  1086673 ctataa 1086678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 22885076 - 22885153
Alignment:
Q  24 agatcaatcagccttcaccacctctcatcctccaatc-actgaaagaacatcaaaacagcccaaaaccaaacttgaac 100  Q
    |||||||||| | | |||||||||||| ||||   || || ||||||||| ||||||| |||||||||||||||||||    
T  22885076 agatcaatcaacttccaccacctctcaacctctggtccaccgaaagaacaccaaaacaacccaaaaccaaacttgaac 22885153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 36986000 - 36985923
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| |  |||||||||||||  | ||||||||||| |||||||||| |||||    
T  36986000 ttttaccaaacacattatttttaataagcaagattttcagctataagctatcagctatcagtcatcagctataagcta 36985923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 296
Target Start/End: Complemental strand, 38927859 - 38927770
Alignment:
Q  207 tataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatca 296  Q
    ||||||||||||||| ||||| ||||| |||||||  | ||||||| | |||| ||||  || ||||| |||| |||||||||| |||||    
T  38927859 tataaattaaacatatatgtacttttaagtcattttgtgtttattagtaacttcaaaagctaattttatcaaatactttaatttaaatca 38927770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 34440033 - 34440165
Alignment:
Q  182 aaaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaaca 281  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||| || ||||||||||||    
T  34440033 aaaaaatgtttatacatataacttatataaattaaacattcatgtatttt-atgtcatttcatatttattaattacttaaaaaactaattttaccaaaca 34440131  T
Q  282 ctttaatttcaatcagctaacttttcagctataa 315  Q
    ||||||||| |||||||||||||||||| |||||    
T  34440132 ctttaattttaatcagctaacttttcagttataa 34440165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 190 - 313
Target Start/End: Original strand, 33434284 - 33434406
Alignment:
Q  190 tttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatt 289  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||  ||||||||||||| || ||||| |  ||||||||||||||||||||    
T  33434284 tttatacatataacttatacaaattaaacatacatgtacttttatgtcattttatatttattaattaattgaaaaactgattttaccaaacactttaatt 33434383  T
Q  290 tcaatcagctaacttttcagctat 313  Q
    | ||||||||||||||||||||||    
T  33434384 t-aatcagctaacttttcagctat 33434406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 178 - 306
Target Start/End: Original strand, 45619880 - 45620009
Alignment:
Q  178 gtgaaaaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttacca 277  Q
    ||||||||| |||||||| |||||||||||| |||||||||||||||||| |||||||||||||  |   ||||||||||||||||| ||  ||||||||    
T  45619880 gtgaaaaaaatgtttatatatataacttatacaaattaaacatacatgtacttttatgtcattttattcctattaattacttaaaaagttgattttacca 45619979  T
Q  278 aacactttaa-tttcaatcagctaactttt 306  Q
    |||| ||||| ||| |||||||||||||||    
T  45619980 aacaatttaattttgaatcagctaactttt 45620009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 2389855 - 2389737
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatc 328  Q
    |||||||||||||  ||||||  ||  |||| || || || ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  2389855 ttttatgtcattttatatttaacaaccacttcaacaactaattttaccaaacactttaatttcaatcagctaacttttcagctataagctttcagctatc 2389756  T
Q  329 agccatcagctatcagcta 347  Q
    |||||||| |||| |||||    
T  2389755 agccatcaactataagcta 2389737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 45550246 - 45550324
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||||||||||||||||| |||||    
T  45550246 ttttaccaaacacttttaattttaatcagctaacttttcagctataatctatcagctatcagccatcagctataagcta 45550324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 1771173 - 1771092
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    |||||||||||||||| ||||| |||||||||| |||||||||||||  | |||||||||| ||||||||||||||||||||    
T  1771173 ttttaccaaacacttttaattttaatcagctaaattttcagctataagctatcagctatcatccatcagctatcagctaact 1771092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 19914171 - 19914249
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | ||||||| |||||||||||||| |||||    
T  19914171 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctaccagccatcagctataagcta 19914249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 210 - 347
Target Start/End: Original strand, 28460149 - 28460286
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  ||||| ||||||||||||||  ||||||| | | |||| || |  || |||||||||| | ||| ||||| |||||||||||||||||    
T  28460149 aaattaaacaagcatgtttttttatgtcattttatatttat-agtcacttcaacagctaattttaccaaatatttttaattttaatcagctaacttttca 28460247  T
Q  309 gctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||| || |||||||||| ||||||||||| |||||    
T  28460248 gctataagttatcagctatcaaccatcagctataagcta 28460286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 30410751 - 30410673
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||| |||||||||||||||||||| || |||||||||| ||||||||||| |||||    
T  30410751 ttttaccaaacacttttaattttaattagctaacttttcagctataagttatcagctatcaaccatcagctataagcta 30410673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 183 - 313
Target Start/End: Complemental strand, 44587776 - 44587645
Alignment:
Q  183 aaaagtgtttatacatataacttata-taaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaaca 281  Q
    |||| |||||||| |||||| ||||| || ||||||||||  |||| |||||||||||||  ||||||| ||| |||| ||||  || ||||| ||||||    
T  44587776 aaaaatgtttataaatataatttataatatattaaacatatgtgtacttttatgtcattttatatttatcaatcacttcaaaatctaattttatcaaaca 44587677  T
Q  282 ctttaatttcaatcagctaacttttcagctat 313  Q
    ||||||||| |  |||||| ||||||||||||    
T  44587676 ctttaatttaagacagctagcttttcagctat 44587645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 36180775 - 36180657
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatc 328  Q
    ||||||| |||||  || |||| ||| |||| || || || ||||||||||||| ||| ||| ||| ||| ||||||||||||||||| | |||| ||||    
T  36180775 ttttatgccattttatacttatcaatcacttcaacaactaattttaccaaacacattatttttaataagcaaacttttcagctataaactatcagttatc 36180676  T
Q  329 agccatcagctatcagcta 347  Q
    || ||||||||||||||||    
T  36180675 agtcatcagctatcagcta 36180657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 270 - 342
Target Start/End: Original strand, 51930210 - 51930283
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatc 342  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||||||| || |||||||    
T  51930210 ttttaccaaacacttttaatttaaatcagctaacttttcagctataagctatcagctatcagctattagctatc 51930283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 20987548 - 20987631
Alignment:
Q  216 aacatacatgtatttttatgtcatttcctatttattaattactt-aaaaaattagttttaccaaacactttaatttcaatcagc 298  Q
    |||||| || || ||||| |||||||  ||||||||||| |||| ||||||||| ||||||||||||||||||||| |||||||    
T  20987548 aacatatatttacttttaagtcattttatatttattaataactttaaaaaattaattttaccaaacactttaatttaaatcagc 20987631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 52575557 - 52575443
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcag 309  Q
    |||||| ||||||||||| |||||||||||||  ||||||| | | | || ||||  || |||||||||||| ||||||| ||| |||| | ||||||||    
T  52575557 aaattacacatacatgtacttttatgtcattttatatttatcattcatttcaaaagctaattttaccaaacaatttaattacaaacagccagcttttcag 52575458  T
Q  310 ctataaattttcagc 324  Q
    ||||||  |||||||    
T  52575457 ctataagctttcagc 52575443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 39839494 - 39839417
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||||||||||| ||||||||||||||||    
T  39839494 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagtcatcagctatcagcta 39839417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 308
Target Start/End: Complemental strand, 26920254 - 26920154
Alignment:
Q  208 ataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttc 307  Q
    |||||||||||||| ||||| ||||| |||||||  | | ||||| | |||| ||||  || ||||||||||||||||||||| ||||||| | ||||||    
T  26920254 ataaattaaacatatatgtacttttaagtcattttgtgtatattagtaacttcaaaagctaattttaccaaacactttaatttaaatcagcaagcttttc 26920155  T
Q  308 a 308  Q
    |    
T  26920154 a 26920154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 37113724 - 37113644
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||| ||||||| |||||||||||||||||||    
T  37113724 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcaactatcagtcatcagctatcagctaact 37113644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 25697556 - 25697627
Alignment:
Q  270 ttttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||||||  |||| ||| | ||||||||||||||||||  | |||||||||||||||||||||    
T  25697556 ttttaccaaacactttttattttaataaactaacttttcagctataagctatcagctatcagccatcagcta 25697627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 40686387 - 40686430
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||    
T  40686387 ttttatcaaacactttaatttcaatcaactaacttttcagctat 40686430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 30654100 - 30654146
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  30654100 ttttaccaaacacttttaattttaatcagctaacttttcagctataa 30654146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 331
Target Start/End: Original strand, 32013068 - 32013178
Alignment:
Q  221 acatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaatttt 320  Q
    |||||| ||||||||||||||  || |||| | | |||| || || || ||||||||||||| ||| ||| ||| ||| | ||||||||||||||| | |    
T  32013068 acatgtctttttatgtcattttatacttatcagtcactttaacaactaattttaccaaacacattatttttaataagcaagcttttcagctataaactat 32013167  T
Q  321 cagctatcagc 331  Q
    |||||||||||    
T  32013168 cagctatcagc 32013178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 347
Target Start/End: Original strand, 53284690 - 53284808
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatc 328  Q
    |||||||||||||  ||||||| |   |||| || || || ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||    
T  53284690 ttttatgtcattttatatttatcagccacttcaacaactaattttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatc 53284789  T
Q  329 agccatcagctatcagcta 347  Q
    ||| | |||||||||||||    
T  53284790 agctaccagctatcagcta 53284808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 28779168 - 28779229
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    ||||||||||||||||||||||||||| |||  |||||||| ||||  || |||||||||||    
T  28779168 ttttaccaaacactttaatttcaatcaactagtttttcagccataagcttccagctatcagc 28779229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 224 - 313
Target Start/End: Complemental strand, 45109160 - 45109071
Alignment:
Q  224 tgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    |||| |||||||||||||  ||||| ||| | | || ||||  || |||||||||||| ||||||||||||||| || ||||||||||||    
T  45109160 tgtacttttatgtcattttatattttttagtcatttcaaaagctaattttaccaaacattttaatttcaatcagttagcttttcagctat 45109071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 31998424 - 31998495
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    |||||||||||||||| ||||| ||| ||| |||||||||||||| |  | ||||| |||||||||||||||    
T  31998424 ttttaccaaacacttttaattttaataagccaacttttcagctatcagctatcagccatcagccatcagcta 31998495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 19801195 - 19801125
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||||| ||||||||    
T  19801195 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagctatcagcta 19801125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 54687496 - 54687538
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagcta 312  Q
    ||||||||||||||||||||||||||| |||  ||||||||||    
T  54687496 ttttaccaaacactttaatttcaatcaactagtttttcagcta 54687538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 19802603 - 19802648
Alignment:
Q  302 cttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||| |||| | ||||||||||| ||||||||||||||||    
T  19802603 cttttcagctttaaaatatcagctatcagtcatcagctatcagcta 19802648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 20530563 - 20530458
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcag 309  Q
    |||||||||| ||||||  ||||| |||||||  ||||||||| | |||| ||    || ||||||||||||||||||||| ||| |||||  ||||||     
T  20530563 aaattaaacaaacatgttcttttaggtcattttatatttattagtcacttcaaccgctaattttaccaaacactttaattttaataagctagtttttcaa 20530464  T
Q  310 ctataa 315  Q
    ||||||    
T  20530463 ctataa 20530458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 49334553 - 49334492
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    ||||||||||||| ||| ||| ||| ||| ||||||||||||||||  | ||||||||||||    
T  49334553 ttttaccaaacacattatttttaataagcaaacttttcagctataagctatcagctatcagc 49334492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 36)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 177 - 290
Target Start/End: Complemental strand, 41788345 - 41788233
Alignment:
Q  177 ggtgaaaaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttacc 276  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||  |||||||||     
T  41788345 ggtgaaaaaa-tgtttatacatataacttatataaattaaacatacatgtacttttatgtcatttcatatttattaattacttaaaaagctagttttaca 41788247  T
Q  277 aaacactttaattt 290  Q
    ||||| ||||||||    
T  41788246 aaacattttaattt 41788233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 224 - 350
Target Start/End: Complemental strand, 5964773 - 5964647
Alignment:
Q  224 tgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcag 323  Q
    ||||||||||||||||||  ||||||| | |||||| |||| ||| ||||||||||||||||||||||||||| |||  |||||||||||||  ||||||    
T  5964773 tgtatttttatgtcattttatatttatcagttacttcaaaagttaattttaccaaacactttaatttcaatcaactagtttttcagctataagctttcag 5964674  T
Q  324 ctatcagccatcagctatcagctaact 350  Q
    ||| ||| |||||||||| ||||||||    
T  5964673 ctaccagtcatcagctataagctaact 5964647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 224 - 347
Target Start/End: Original strand, 34618442 - 34618565
Alignment:
Q  224 tgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcag 323  Q
    |||| |||||||||||||  ||||||| | | |||| ||||| || ||||||||||||||||||| ||||||| |||  |||||||||||||  |||||     
T  34618442 tgtacttttatgtcattttatatttatcagtcacttcaaaaactaattttaccaaacactttaatatcaatcaactagtttttcagctataagctttcaa 34618541  T
Q  324 ctatcagccatcagctatcagcta 347  Q
    ||| ||| |||||||||| |||||    
T  34618542 ctaccagtcatcagctataagcta 34618565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 5838988 - 5839068
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| | |||||||||||||| || ||||||||||| |||||||||||||||||||    
T  5838988 ttttaccaaacacattatttttaataagcaagcttttcagctataagttatcagctatcagtcatcagctatcagctaact 5839068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 347
Target Start/End: Original strand, 32175678 - 32175802
Alignment:
Q  223 atgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttca 322  Q
    ||||| ||||| |||||||  ||||| ||| | |||| ||||  || ||||||||||||||||||||| ||||||| | ||||||||||||||  | | |    
T  32175678 atgtacttttaagtcattttatattttttagtaacttcaaaatctaattttaccaaacactttaatttaaatcagcaagcttttcagctataagctataa 32175777  T
Q  323 gctatcagccatcagctatcagcta 347  Q
    |||||||| |||||||||| |||||    
T  32175778 gctatcagtcatcagctataagcta 32175802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 203 - 331
Target Start/End: Complemental strand, 34900335 - 34900207
Alignment:
Q  203 cttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaac 302  Q
    |||||| ||| |||| ||||||||| |||||||||||||  ||||||| |   | || ||||  || ||||||||||||| |||||||||| ||| || |    
T  34900335 cttataaaaaataaagatacatgtacttttatgtcattttatatttatcacacatttcaaaagctaattttaccaaacacattaatttcaaacagttagc 34900236  T
Q  303 ttttcagctataaattttcagctatcagc 331  Q
    |||||||||||||| | ||||||||||||    
T  34900235 ttttcagctataaactatcagctatcagc 34900207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 18146938 - 18147016
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||||||| |||| | ||||||||    
T  18146938 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcagctatcaaccatcagcta 18147016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 12209410 - 12209472
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | ||||||||||||    
T  12209410 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcagc 12209472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 12453838 - 12453900
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | ||||||||||||    
T  12453838 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcagc 12453900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 45237329 - 45237191
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    |||||||||| ||||||  |||||||||||||  ||||||| | | |||| || |  || |||||||||||||||| ||||| ||| || || |||||||    
T  45237329 aaattaaacaaacatgtccttttatgtcatttaatatttatcagtcacttcaacagctaattttaccaaacacttttaattttaataagttagcttttca 45237230  T
Q  309 gctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||  |  ||| ||||||||||||||||| |||||    
T  45237229 gctataagctaccagttatcagccatcagctataagcta 45237191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 35011187 - 35011082
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcag 309  Q
    |||||| ||||||||||| |||||||||||||  ||||||| | | | || ||||  || |||||||||||| ||||||| ||| || | ||||||||||    
T  35011187 aaattacacatacatgtacttttatgtcattttatatttatcattcatttcaaaagctaattttaccaaacaatttaattacaaacaaccaacttttcag 35011088  T
Q  310 ctataa 315  Q
    ||||||    
T  35011087 ctataa 35011082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 347
Target Start/End: Original strand, 7303937 - 7303997
Alignment:
Q  287 atttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||| ||| ||||||||||||||||||||  | |||||||||||||| |||||||||||||    
T  7303937 attttaataagctaacttttcagctataagctatcagctatcagccaccagctatcagcta 7303997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 350
Target Start/End: Original strand, 14912489 - 14912569
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||| ||||||  | ||||||||||| |||||||||||||||||||    
T  14912489 ttttaccaaacacattatttttaataagcaagcttttcaactataagctatcagctatcagtcatcagctatcagctaact 14912569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 40532614 - 40532674
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatca 329  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | ||||||||||    
T  40532614 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatca 40532674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 4477120 - 4477049
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||| || ||||| |||||| || |||||    
T  4477120 ttttaccaaacacttttaattttaatcagctaacttttgagctataagttatcagccatcagctataagcta 4477049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 45069356 - 45069270
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||  ||||||| | | |||| || || || |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  45069356 ttttatgtcattttatatttat-agtcacttcaacaactaattttaccaaacacttttaattttaatcagctaacttttcagctataa 45069270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 328
Target Start/End: Complemental strand, 45236345 - 45236246
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatc 328  Q
    |||||||||||||  ||||||| ||| |||| || |  || |||||||||||| |||||||| ||| ||||||||||| |||||||| || ||| |||||    
T  45236345 ttttatgtcattttatatttatcaatcacttcaacagctaattttaccaaacattttaatttaaataagctaactttttagctataagttatcaactatc 45236246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 3513062 - 3513140
Alignment:
Q  270 ttttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||||||  |||| ||| ||||||||||||||||||||| | ||| ||||||| ||||| ||| ||||||    
T  3513062 ttttaccaaacactttttattttaataagctaacttttcagctataaactatcatctatcagtcatcaactaccagcta 3513140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 17155380 - 17155306
Alignment:
Q  273 taccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||| | ||| ||| ||| ||| | |||||||||||||| || ||||||||||| ||||||||||||||||    
T  17155380 taccaaacccattatttttaataagcaagcttttcagctataagttatcagctatcagtcatcagctatcagcta 17155306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 277 - 331
Target Start/End: Complemental strand, 21266351 - 21266297
Alignment:
Q  277 aaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    |||||||||||||||||||| ||||||||||||| |||| ||| || ||||||||    
T  21266351 aaacactttaatttcaatcaactaacttttcagccataagtttccaactatcagc 21266297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 24804008 - 24803931
Alignment:
Q  270 ttttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||||||  |||| ||| ||||||||||||||||||||  | ||||||||||||| ||||||| ||||||    
T  24804008 ttttaccaaacactttttattttaataagctaacttttcagctataagctatcagctatcagcc-tcagctaccagcta 24803931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 315
Target Start/End: Complemental strand, 36049612 - 36049526
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||| ||||||| | ||| ||||| || || |||||| ||||||| ||| |||||||| ||||||| | ||||||||    
T  36049612 ttttatgtcatttcatatttataatttagttaaacaactaattttacaaaacactataaattcaatcaactaacttattagctataa 36049526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 17720641 - 17720726
Alignment:
Q  16 tattctcaagatcaatcagccttcaccacctctcatcctccaatc-actgaaagaacatcaaaacagcccaaaaccaaacttgaac 100  Q
    |||||| ||||||||||| | | |||||||||||| |||| | || || ||||||||| ||||||||||||||||| || ||||||    
T  17720641 tattctaaagatcaatcaacttccaccacctctcaacctcaagtccaccgaaagaacaccaaaacagcccaaaacctaaattgaac 17720726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 35056791 - 35056746
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataa 315  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  35056791 ttttaccaaacactttaatttcaatcaactagcttttcagccataa 35056746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 314
Target Start/End: Original strand, 43874487 - 43874591
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  ||||| ||||||||||||||  ||||||| | | |||| || |  || |||||||||||||||| ||||| |||||||||||||||||    
T  43874487 aaattaaacaagcatgtgtttttatgtcattttatatttat-agtcacttcaacagctaattttaccaaacacttttaattttaatcagctaacttttca 43874585  T
Q  309 gctata 314  Q
    | ||||    
T  43874586 gttata 43874591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 313
Target Start/End: Original strand, 31719379 - 31719483
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| ||| |||| || |  || |||||||||||| ||| ||||| ||| |||||||||||||    
T  31719379 aaattaaacaagcatgttcttttatgtcattttatatttatcaatcacttcaacagctaattttaccaaacagttttaattttaataagctaacttttca 31719478  T
Q  309 gctat 313  Q
    |||||    
T  31719479 gctat 31719483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 35252603 - 35252499
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| | | | || || | ||| |||||||||||||||| ||||| ||| |||||||||||||    
T  35252603 aaattaaacaagcatgtccttttatgtcattttatatttatcagtcagttcaacagttaattttaccaaacacttttaattttaataagctaacttttca 35252504  T
Q  309 gctat 313  Q
    |||||    
T  35252503 gctat 35252499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 39103674 - 39103630
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctat 313  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  39103674 ttttaccaaacacttttaattttaatcagctaacttttcagctat 39103630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 333
Target Start/End: Original strand, 42803825 - 42803889
Alignment:
Q  270 ttttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagcca 333  Q
    ||||||||||||||||  |||| ||| ||||||||||||||||||||| | ||||| ||||||||    
T  42803825 ttttaccaaacactttttattttaataagctaacttttcagctataaactatcagccatcagcca 42803889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 340
Target Start/End: Original strand, 16788335 - 16788402
Alignment:
Q  273 taccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    |||||||||||||||||||||||| ||| |||| |||| ||||  || ||||||||||| | ||||||    
T  16788335 taccaaacactttaatttcaatcaactagctttacagccataagcttccagctatcagctaccagcta 16788402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 99
Target Start/End: Original strand, 32945687 - 32945722
Alignment:
Q  64 gaaagaacatcaaaacagcccaaaaccaaacttgaa 99  Q
    ||||||||||||||| ||||||||||||||||||||    
T  32945687 gaaagaacatcaaaaaagcccaaaaccaaacttgaa 32945722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 315
Target Start/End: Complemental strand, 29050717 - 29050611
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| |  ||||| || || || |||||||||| ||||| ||||| ||| |||||||||||||    
T  29050717 aaattaaacaagcatgtccttttatgtcattttatatttatcagctactttaacaactaattttaccaaatacttttaattttaataagctaacttttca 29050618  T
Q  309 gctataa 315  Q
    | |||||    
T  29050617 gttataa 29050611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 41356876 - 41356922
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| |||| |||||||||||||||||||    
T  41356876 ttttaccaaacacttttaattttaatccgctaacttttcagctataa 41356922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 35397387 - 35397310
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||| ||||||  | ||||||||| | ||||||||||||||||    
T  35397387 ttttaccaaacacattatttttaataagcaagcttttcaactataagctatcagctatctgtcatcagctatcagcta 35397310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 39103640 - 39103607
Alignment:
Q  317 ttttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||||||||||||||| ||||||||    
T  39103640 ttttcagctatcagccatcagctataagctaact 39103607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 20696714 - 20696634
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| | | | |||||||| |||||  | |||||||||||  ||||||||||||||||||    
T  20696714 ttttaccaaacacattatttttaataaccaagcttttcagatataagctatcagctatcagttatcagctatcagctaact 20696634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 183 - 309
Target Start/End: Complemental strand, 8850436 - 8850310
Alignment:
Q  183 aaaagtgtttatacatataacttatataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacac 282  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||| |||||| ||||||  ||| ||||||| ||||||||| ||  |||||| ||||||    
T  8850436 aaaaatgtttatacatataatttatataaattaaatatacatgtacttttatatcattttatatctattaatgacttaaaaatttgattttactaaacac 8850337  T
Q  283 tttaatttcaatcagctaacttttcag 309  Q
    |||||||| ||||||| ||||||||||    
T  8850336 tttaattttaatcagccaacttttcag 8850310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 4513636 - 4513714
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||| || |||||||||||||||||||||| |||||    
T  4513636 ttttaccaaacacttttaattttaatcagctaacttttcagctataagttatcagctatcagccatcagctataagcta 4513714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 219 - 345
Target Start/End: Complemental strand, 1533171 - 1533046
Alignment:
Q  219 atacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaatt 318  Q
    ||||||||| |||||||||||||  ||| ||| | ||| || | || ||| |||||| ||||||||||| ||||| ||||||  |||||||||||||  |    
T  1533171 atacatgtacttttatgtcattttatatatatcatttatttcagaagttaattttacgaaacactttaacttcaaccagctag-ttttcagctataagct 1533073  T
Q  319 ttcagctatcagccatcagctatcagc 345  Q
    |||||||||||||||||||||||||||    
T  1533072 ttcagctatcagccatcagctatcagc 1533046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 347
Target Start/End: Original strand, 27668182 - 27668319
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  ||||| ||||||||||||||  ||||||| | | |||| || | ||| |||||||||||||||| ||||| |||||||||||||||||    
T  27668182 aaattaaacaagcatgtgtttttatgtcattttatatttat-agtcacttcaacagttaattttaccaaacacttttaattttaatcagctaacttttca 27668280  T
Q  309 gctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||  | ||| ||||||| |||||||||| |||||    
T  27668281 gctataagctatcatctatcagtcatcagctataagcta 27668319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 31656951 - 31657029
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||||||||||||||||| |||||    
T  31656951 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcagccatcagctataagcta 31657029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 347
Target Start/End: Complemental strand, 18034306 - 18034194
Alignment:
Q  235 gtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccat 334  Q
    |||||||  ||||||||| |||| | || || || ||||||||||||||||||||| ||| |||||||||||||| ||||| || |||||||||| ||||    
T  18034306 gtcattttatatttattagttacctcaacaactaattttaccaaacactttaatttaaataagctaacttttcagatataagttatcagctatcaaccat 18034207  T
Q  335 cagctatcagcta 347  Q
    || |||| |||||    
T  18034206 caactataagcta 18034194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 210 - 343
Target Start/End: Original strand, 38667723 - 38667856
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| | | |||| || || || ||||| |||||||||| ||||| |||||||||||||||||    
T  38667723 aaattaaacaagcatgtccttttatgtcattttatatttat-agtcacttcaacaactaattttatcaaacacttttaattttaatcagctaacttttca 38667821  T
Q  309 gctataaattttcagctatcagccatcagctatca 343  Q
    |||||||  | |||||||| |||||||||||||||    
T  38667822 gctataagctatcagctattagccatcagctatca 38667856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 270 - 337
Target Start/End: Complemental strand, 18544786 - 18544718
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcag 337  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||| | ||||||| ||||||||||    
T  18544786 ttttaccaaacacttttaattttaatcagctaacttttcagctataaactatcagctaccagccatcag 18544718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 3795522 - 3795385
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    |||||||||| ||||||  |||||||||||||  ||||||| | | |||| || |  || |||||||||||||||| ||||| |||||||||| ||||||    
T  3795522 aaattaaacaaacatgtccttttatgtcattttatatttat-agtcacttcaacagctaattttaccaaacacttttaattttaatcagctaatttttca 3795424  T
Q  309 gctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||  | | | |||||||||||||||||| |||||    
T  3795423 gctataagctattaactatcagccatcagctataagcta 3795385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 25366364 - 25366434
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||  || ||||||||| | ||||||||    
T  25366364 ttttaccaaacactttaatttcaatcaactagcttttcagccataagcttccagctatcaactatcagcta 25366434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 347
Target Start/End: Complemental strand, 39447947 - 39447861
Alignment:
Q  261 aaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||| ||| |||||||||||||||||||||||| |||||| ||||||| |||  |  |||||||||| || |||||||||| |||||    
T  39447947 aaaagttaattttaccaaacactttaatttcaaacagctagcttttcaactaatagctttcagctataagtcatcagctataagcta 39447861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 3569737 - 3569660
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||||||||||| ||||||||||||||||    
T  3569737 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagtcatcagctatcagcta 3569660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 264 - 315
Target Start/End: Original strand, 5699100 - 5699152
Alignment:
Q  264 aattagttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    ||||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  5699100 aattaattttaccaaacacttttaattttaatcagctaacttttcagctataa 5699152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 9224438 - 9224484
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  9224438 ttttaccaaacacttttaattttaatcagctaacttttcagctataa 9224484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 12769949 - 12769869
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||| || ||||| |||||||||||||    
T  12769949 ttttaccaaacacattatttttaataagcaatcttttcagctataagctatcagctattagtcatcaactatcagctaact 12769869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 35180414 - 35180458
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctat 313  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||    
T  35180414 ttttaccaaacacttttaattttaatcagctaacttttcagctat 35180458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 42627740 - 42627669
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||| |||||       |||||||||||||||||||| |||||    
T  42627740 ttttaccaaacacttttaattttaatcagctaacttttcaactata-------agctatcagccatcagctataagcta 42627669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 14391016 - 14391094
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||| ||||| ||||| |||||||||||||||||  |||||  | |||||||| |||||||| |||| |||||    
T  14391016 ttttaccaaatacttttaattttaatcagctaacttttcaattataagctatcagctattagccatcaactataagcta 14391094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 20470195 - 20470241
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  20470195 ttttaccaaacacttttaattttaatcagctaactttttagctataa 20470241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 33077164 - 33077234
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    |||||||||||| |||||||||||||| |||  |||||||| ||||  || ||||||| ||| ||||||||    
T  33077164 ttttaccaaacattttaatttcaatcaactagtttttcagccataagcttccagctataagctatcagcta 33077234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 39325017 - 39324971
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  39325017 ttttaccaaacacttttaattttaatcagctaacttttcaactataa 39324971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 1189479 - 1189402
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| | | ||| ||||||||||||||||  | ||||||| ||| ||||| ||||||||||    
T  1189479 ttttaccaaacacattatttttactaagcaaacttttcagctataagctatcagctaccagtcatcaactatcagcta 1189402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 27748327 - 27748404
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||| || ||| ||| ||| ||| |  |||||||||||||| | ||| ||||||| ||||||||||||||||    
T  27748327 ttttaccaaatacattatttttaataagcaaggttttcagctataaactatcaactatcagtcatcagctatcagcta 27748404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 39326336 - 39326413
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| | | | ||||||||||||||  | |||||||||||| | |||||||||||||    
T  39326336 ttttaccaaacacattatttttaataaacaagcttttcagctataagctatcagctatcagctaccagctatcagcta 39326413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 45900859 - 45900936
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||||| | ||| |||||||||    
T  45900859 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagctaccagttatcagcta 45900936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 5675302 - 5675226
Alignment:
Q  272 ttaccaaacacttta-atttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||||  |||| ||| || |||||||||||||||||  | ||||||||||| ||||| |||| |||||    
T  5675302 ttaccaaacactttttattttaataagttaacttttcagctataagctatcagctatcagtcatcaactataagcta 5675226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 46312031 - 46311951
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||  ||| ||| ||| ||| | ||||||||||||||  | || |||||||| | |||||||||||||||||    
T  46312031 ttttaccaaacatattatttttaataagcaagcttttcagctataagctatctgctatcagtcttcagctatcagctaact 46311951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 210 - 347
Target Start/End: Original strand, 21527515 - 21527652
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcag 309  Q
    |||||||||||||||||  |||||||||||||  ||||||| | | |||| || | ||| ||||||||||||||||||||| |||||||||  |||||||    
T  21527515 aaattaaacatacatgtccttttatgtcattttatatttatgagtcacttcaatagttaattttaccaaacactttaattttaatcagctagtttttcag 21527614  T
Q  310 ctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||  |||||| | | || |||||||||| |||||    
T  21527615 ctataagctttcagtttttagtcatcagctataagcta 21527652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 18802304 - 18802382
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||||| ||||| ||||||||||||||||||||||||  | |||||||||||| |||||| ||||||||    
T  18802304 ttttaccaaacacttttaattttaatcagctaacttttcagctataagctatcagctatcagctatcagccatcagcta 18802382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 207 - 289
Target Start/End: Original strand, 13867298 - 13867380
Alignment:
Q  207 tataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatt 289  Q
    ||||||||||||||| ||||| ||||| |||||||  | ||||||| | |||| |||| ||| ||||||||||||||||||||    
T  13867298 tataaattaaacatatatgtacttttaagtcattttgtgtttattagtaacttcaaaagttaattttaccaaacactttaatt 13867380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 347
Target Start/End: Original strand, 1790324 - 1790454
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| | | |||| || || || |||||||||||||||| ||||| |||||||||||||||||    
T  1790324 aaattaaacaagcatgtccttttatgtcattttatatttat-agtcacttcaacaactaattttaccaaacacttttaattttaatcagctaacttttca 1790422  T
Q  309 gctataaattttcagctatcagccatcagctatcagcta 347  Q
     |||||       |||||||||||||||||||| |||||    
T  1790423 actata-------agctatcagccatcagctataagcta 1790454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 313
Target Start/End: Complemental strand, 31603475 - 31603371
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacac-tttaatttcaatcagctaacttttca 308  Q
    ||||||||||  |||||  |||||||||||||  ||||||| ||  |||| || || || ||||||||||||| |||||||| ||| |||||||||||||    
T  31603475 aaattaaacaagcatgtccttttatgtcattttatatttatcaaccacttcaacaactaattttaccaaacacttttaattttaataagctaacttttca 31603376  T
Q  309 gctat 313  Q
    |||||    
T  31603375 gctat 31603371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 4977076 - 4977162
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||  ||||||| | | |||| || | ||| |||||||||||||||| ||||| ||||||||||||||||||||||||    
T  4977076 ttttatgtcattttatatttat-agtcacttcaacagttaattttaccaaacacttttaattttaatcagctaacttttcagctataa 4977162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 347
Target Start/End: Original strand, 32560585 - 32560715
Alignment:
Q  217 acatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaa 316  Q
    ||||||||||  |||||||||||||  ||||||| |   |||| || || || ||||||||||||||| ||||| ||| | ||| ||||||||||||||     
T  32560585 acatacatgtccttttatgtcattttatatttatcagccacttcaacaactaattttaccaaacacttcaattttaataaactatcttttcagctataag 32560684  T
Q  317 ttttcagctatcagccatcagctatcagcta 347  Q
     | |||||||| || |||||| ||| |||||    
T  32560685 ctatcagctataagacatcagttataagcta 32560715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 25022320 - 25022259
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    ||||||||||||| ||| ||| ||| ||| |||||||||||||||| || ||||||||||||    
T  25022320 ttttaccaaacacattatttttaataagcaaacttttcagctataagttatcagctatcagc 25022259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 24118557 - 24118477
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| |  |||||||||||||  | |||||||||||| | ||||||||||||||||    
T  24118557 ttttaccaaacacattatttttaataagcaagtttttcagctataagctatcagctatcagctaccagctatcagctaact 24118477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 22708044 - 22708114
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||||||||||| |||||||||    
T  22708044 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagtcatcagcta 22708114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 31259055 - 31259009
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  31259055 ttttaccaaacacttttaattttaatcagctaactttttagctataa 31259009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 331
Target Start/End: Complemental strand, 32986308 - 32986247
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||| | ||||||||||||    
T  32986308 ttttaccaaacacgttatttttaataagcaagcttttcagctataaactatcagctatcagc 32986247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 346
Target Start/End: Original strand, 12131226 - 12131302
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagct 346  Q
    ||||||||||||| ||| ||| ||| | | |  |||||||||||||| | ||||||||||  |||||||||||||||    
T  12131226 ttttaccaaacacattatttttaataaacaagtttttcagctataaactatcagctatcaatcatcagctatcagct 12131302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 326
Target Start/End: Complemental strand, 13755666 - 13755610
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagcta 326  Q
    ||||||||||||| ||| ||| ||| ||| |||||||||||||||| || |||||||    
T  13755666 ttttaccaaacacattatttttaataagcaaacttttcagctataagttatcagcta 13755610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 214 - 347
Target Start/End: Complemental strand, 5049609 - 5049476
Alignment:
Q  214 taaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    |||||||||||||| |||||||||||||   | |||||| | | || |||| ||| |||||||||||||||||||||||| || |||  |||| || ||     
T  5049609 taaacatacatgtacttttatgtcattttaaacttattactcattttaaaagttaattttaccaaacactttaatttcaaacaactagttttttagttaa 5049510  T
Q  314 aaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||||||| |||||||||| |||||    
T  5049509 aaattttcagctatcagtcatcagctataagcta 5049476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 13019588 - 13019666
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||| ||| ||||| ||||||||||||||||||||||||  | |||||||||||||||||||||| |||||    
T  13019588 ttttaccaaacatttttaattttaatcagctaacttttcagctataagctatcagctatcagccatcagctataagcta 13019666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 20768430 - 20768293
Alignment:
Q  210 aaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttca 308  Q
    ||||||||||  ||||| ||||||||||||||  ||||||| | | |||| || |  || |||||||||| | ||| ||||| |||||||||||||||||    
T  20768430 aaattaaacaagcatgtttttttatgtcattttatatttat-agtcacttcaacagctaattttaccaaatatttttaattttaatcagctaacttttca 20768332  T
Q  309 gctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||| || |||||||||| ||||||||||| |||||    
T  20768331 gctataagttatcagctatcaaccatcagctataagcta 20768293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 7947955 - 7947837
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttcagctataaattttcagctat 327  Q
    |||||||||||||  ||||||| | | |||| || || || |||||||||||||||| ||||| ||| ||||||||||||||||||||  | ||||||||    
T  7947955 ttttatgtcattttatatttat-agtcacttcaacaactaattttaccaaacacttttaattttaatgagctaacttttcagctataagctatcagctat 7947857  T
Q  328 cagccatcagctatcagcta 347  Q
    ||||||||| |||| |||||    
T  7947856 cagccatcaactataagcta 7947837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 214 - 325
Target Start/End: Complemental strand, 43347886 - 43347775
Alignment:
Q  214 taaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctat 313  Q
    ||||||||||| || |||||||||||||  || |||| | | | || ||||| || |||||||||||||||||| ||| | ||||||| |||||| ||||    
T  43347886 taaacatacatatacttttatgtcattttatacttataactcattttaaaaactaattttaccaaacactttaacttcgaacagctaatttttcaactat 43347787  T
Q  314 aaattttcagct 325  Q
    ||||||||||||    
T  43347786 aaattttcagct 43347775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 3704038 - 3704108
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    |||||||||||  |||||||||||||| ||||||||||||| |||| |||||| |||||| | ||||||||    
T  3704038 ttttaccaaacgttttaatttcaatcaactaacttttcagccataagttttcaactatcaactatcagcta 3704108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 347
Target Start/End: Complemental strand, 41733687 - 41733569
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatc 328  Q
    |||||||||||||  || |||| | |||||| || | ||| ||||||||||||| ||| ||| ||| ||| |  ||||||||||||| || ||||||| |    
T  41733687 ttttatgtcattttatacttatcagttacttcaacagttaattttaccaaacacattatttttaataagcaagtttttcagctataagttatcagctacc 41733588  T
Q  329 agccatcagctatcagcta 347  Q
    || ||||||||||||||||    
T  41733587 agtcatcagctatcagcta 41733569  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 331
Target Start/End: Original strand, 17645919 - 17645980
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagc 331  Q
    ||||||||||||||||||||||||||| ||| ||||||||| ||||  || |||||||||||    
T  17645919 ttttaccaaacactttaatttcaatcaactagcttttcagccataagcttccagctatcagc 17645980  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 315
Target Start/End: Original strand, 1924449 - 1924552
Alignment:
Q  212 attaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacacttt-aatttcaatcagctaacttttcagc 310  Q
    ||||||||  |||||  |||||||||||||  ||||||| ||| |||| || || || ||||||||| |||||| ||||| |||||||||||||||||||    
T  1924449 attaaacaagcatgtccttttatgtcattttatatttat-aatcacttcaacaactaattttaccaatcacttttaattttaatcagctaacttttcagc 1924547  T
Q  311 tataa 315  Q
    |||||    
T  1924548 tataa 1924552  T

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Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 350
Target Start/End: Complemental strand, 27812386 - 27812306
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagctaact 350  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||| ||||||| |||||||||||||||||||    
T  27812386 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcaactatcagtcatcagctatcagctaact 27812306  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 298
Target Start/End: Original strand, 3034040 - 3034131
Alignment:
Q  207 tataaattaaacatacatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagc 298  Q
    |||||||| |||||| ||||| ||||| |||||||  | ||||||| | |||| ||||  || ||||||||||||||||||||| |||||||    
T  3034040 tataaattcaacatatatgtacttttaagtcattttgtgtttattagtaacttcaaaagataattttaccaaacactttaatttaaatcagc 3034131  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 29524697 - 29524620
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||||| | |||||||||||||    
T  29524697 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagctaccagctatcagcta 29524620  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 36761876 - 36761953
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||| |||||| ||||||||||||||||    
T  36761876 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagttatcagtcatcagctatcagcta 36761953  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 315
Target Start/End: Complemental strand, 2890485 - 2890391
Alignment:
Q  221 acatgtatttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataa 315  Q
    ||||||| |||||||||||||  ||||||| | | | || ||||   | |||||||||||||||||||||||| || |||  |||||||||||||    
T  2890485 acatgtacttttatgtcattttatatttatcactcatttcaaaagcaaattttaccaaacactttaatttcaaacaactagtttttcagctataa 2890391  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Original strand, 22777939 - 22778009
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    |||||||||| || ||| ||| ||| ||| | ||||||||||||||| | ||||||||||| |||||||||    
T  22777939 ttttaccaaaaacattatttttaataagcaagcttttcagctataaactatcagctatcagtcatcagcta 22778009  T

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Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 340
Target Start/End: Complemental strand, 34589256 - 34589186
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagcta 340  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||||||||||| |||||||||    
T  34589256 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagtcatcagcta 34589186  T

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Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 15499402 - 15499479
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | ||| |||||||| | |||||||||||||    
T  15499402 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcaactatcagctaccagctatcagcta 15499479  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 347
Target Start/End: Complemental strand, 37530078 - 37530001
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||  ||| | ||||||||||||||  | |||||||||||| | |||||||||||||    
T  37530078 ttttaccaaacacattatttttaacaagcaagcttttcagctataagctatcagctatcagctaccagctatcagcta 37530001  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 347
Target Start/End: Complemental strand, 7156785 - 7156741
Alignment:
Q  303 ttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    |||||||||||||  | ||||||||||| ||||||||||||||||    
T  7156785 ttttcagctataagctatcagctatcagtcatcagctatcagcta 7156741  T

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Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 256 - 341
Target Start/End: Original strand, 76876 - 76961
Alignment:
Q  256 acttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctat 341  Q
    |||| |||| ||| ||||||| ||||||||||||| ||||||| |  |||||||||||||  | ||||||||||| ||||||||||    
T  76876 acttcaaaagttaattttacccaacactttaatttaaatcagcaagtttttcagctataagctatcagctatcagtcatcagctat 76961  T

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Target: scaffold1903 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 4 - 51
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataaa 316  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||    
T  4 ttttaccaaacacttttaattttaatcagctaacttttcagctataaa 51  T

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Target: scaffold0464 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 347
Target Start/End: Original strand, 5392 - 5469
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatcagccatcagctatcagcta 347  Q
    ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||||| | |||||||||||||    
T  5392 ttttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatcagctaccagctatcagcta 5469  T

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Target: scaffold0330 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 347
Target Start/End: Original strand, 7704 - 7822
Alignment:
Q  229 ttttatgtcatttcctatttattaattacttaaaaaattagttttaccaaacactttaatttcaatcagctaacttttcagctataaattttcagctatc 328  Q
    |||||||||||||  || |||| |  ||||| || || || ||||||||||||| ||| ||| ||| ||| | ||||||||||||||  | |||||||||    
T  7704 ttttatgtcattttatacttatcagctacttcaacaactaattttaccaaacacattatttttaataagcaagcttttcagctataagctatcagctatc 7803  T
Q  329 agccatcagctatcagcta 347  Q
    || || || ||||||||||    
T  7804 agtcagcaactatcagcta 7822  T

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Target: scaffold0115 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 14297 - 14343
Alignment:
Q  270 ttttaccaaacacttt-aatttcaatcagctaacttttcagctataa 315  Q
    |||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  14297 ttttaccaaacacttttaattttaattagctaacttttcagctataa 14343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 34279 - 34320
Alignment:
Q  270 ttttaccaaacactttaatttcaatcagctaacttttcagct 311  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||    
T  34279 ttttatcaaacactttaatttaaatcagctaactttttagct 34320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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