View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_low_15 (Length: 313)
Name: NF18136_low_15
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 298
Target Start/End: Complemental strand, 6241603 - 6241329
Alignment:
| Q |
20 |
atatgggaaaaatggaaatcaataatgtgaacccccttttcacattccattgattcaacacaatttggtccaggttacagttatagataatcttgcctat |
119 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||| |||| ||| |||| |||||||||||||||||||||||||||| | ||||||| |
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| T |
6241603 |
atatgggaaaaatggagatcaataatgtgaaccaccttttcacatttcatttatttaaca-aatttggtccaggttacagttatagatagttatgcctat |
6241505 |
T |
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| Q |
120 |
tcacgaatatttggatataattgtttatttctttcacaatgnnnnnnnatac-ggtaatgattacaacataattaatatgtaattttcttttagaagttg |
218 |
Q |
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|||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6241504 |
tcacgagtatttggatataattgtttatttctttcacaaggtttt----tactggtaatgattacaacataattaatatgtaattttctgttagaagttg |
6241409 |
T |
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| Q |
219 |
aatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttctt |
298 |
Q |
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| T |
6241408 |
aatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttctt |
6241329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 119 - 298
Target Start/End: Complemental strand, 6233639 - 6233462
Alignment:
| Q |
119 |
ttcacgaatatttggatataattgtttatttctttcacaatgnnnnnnnatacggtaatgattacaacataattaatatgtaattttcttttagaagttg |
218 |
Q |
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| T |
6233639 |
ttcacgagtatttggatataattgtttatttctttcacaa--gttttttatatggtaatgattataacataattaatatgtaattttctgttagaagttg |
6233542 |
T |
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| Q |
219 |
aatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttctt |
298 |
Q |
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| T |
6233541 |
aatgatgacatttattgagagaaagatagtagagaaaatgaggttcagtgatagccaagtaacactattctgtctttctt |
6233462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 6233754 - 6233635
Alignment:
| Q |
37 |
atcaataatgtgaacccccttttcacattccattgattcaacacaatttggtccaggttacagttatagataatcttgcctattcacgaatatttggata |
136 |
Q |
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||||||||| |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||| |
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| T |
6233754 |
atcaataatttgaaccaccttttcacattccattgattgaacacaatttggttcaggttacagttatagatagtcatgcctattcacgagtatttggata |
6233655 |
T |
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| Q |
137 |
taattgtttatttctttcac |
156 |
Q |
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| T |
6233654 |
taattgtttatttctttcac |
6233635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 174 - 241
Target Start/End: Original strand, 13283535 - 13283602
Alignment:
| Q |
174 |
taatgattacaacataattaatatgtaattttcttttagaagttgaatgatgacatttattgagagaa |
241 |
Q |
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|||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||| |
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| T |
13283535 |
taatgattacaacatatttaatatgtaattttatgttagaagttgaatgatgacatttatggagagaa |
13283602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 6914193 - 6914132
Alignment:
| Q |
37 |
atcaataatgtgaacccccttttcacattccattgattcaacacaatttggtccaggttaca |
98 |
Q |
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| T |
6914193 |
atcaattatgtgaaccaccttttcacattccgtatattcaacaaaatttggttcaggttaca |
6914132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 6138712 - 6138670
Alignment:
| Q |
20 |
atatgggaaaaatggaaatcaataatgtgaacccccttttcac |
62 |
Q |
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||||| |||||||||| |||||||||||||||| ||||||||| |
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| T |
6138712 |
atatgagaaaaatggagatcaataatgtgaaccaccttttcac |
6138670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 6914018 - 6913980
Alignment:
| Q |
194 |
atatgtaattttcttttagaagttgaatgatgacattta |
232 |
Q |
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| T |
6914018 |
atatgtaattttctgttagaatttgaatgatgacattta |
6913980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 13283384 - 13283426
Alignment:
| Q |
20 |
atatgggaaaaatggaaatcaataatgtgaacccccttttcac |
62 |
Q |
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| T |
13283384 |
atatgagaaaaatggagatcaataatgtgaaccaccttttcac |
13283426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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