View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18136_low_2 (Length: 766)
Name: NF18136_low_2
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 326 - 757
Target Start/End: Original strand, 40544518 - 40544947
Alignment:
| Q |
326 |
tatcatgagttgcactaatcctcgaccttatatctcaaatcgaataatgagcaacttgatatttttattcccaaccaagggttaaggcaatgggacctta |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40544518 |
tatcatgagttgcactaatcctcgaccttatatctcaaatcgaataatgagcaacttgatatttttattcccaaccaagggttaaggcaatgggacccta |
40544617 |
T |
|
| Q |
426 |
tttctcattagctattcttgctttgcatggagaaaccagttctacttattcnnnnnnngagggaggtcaaccgatggctatctattgggatttctaataa |
525 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
40544618 |
tttctgattagctattcttgctttgcatggagaaaccagttctacttattcaaaaaaagaggg--gtgagccgatggctatctattgggatttctaataa |
40544715 |
T |
|
| Q |
526 |
tgggaatgttgtttctcatcttttcattattgatctttatcttgtctttgcttatataccgacagggttaccaatccaaaattttcctatatgattgata |
625 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40544716 |
tgggaatgttgtttctcatcttttcattattgatcattatcttgtctttgcttatataccgacagggttaccaatccaaaattttcctatatgattgata |
40544815 |
T |
|
| Q |
626 |
tgaataacccaaggctagctggttgcgaagttgggattttaagtagatcaaggagaatgattttggctaagtttgtttttagcccatcattgtggattgg |
725 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40544816 |
tgaacaacccaaggctagctggttgcgaagttgggattttaagtagatcaaggggaatgattttggctaagtttgtttttagcccatcattgtggattgg |
40544915 |
T |
|
| Q |
726 |
ctcctagcatgggttttgacttttgatgatgt |
757 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
40544916 |
ctcctagtatgggttttgacttttgatgatgt |
40544947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 340
Target Start/End: Original strand, 40543045 - 40543369
Alignment:
| Q |
16 |
taataaacctcaaagtttgatggcctttaggacgattatcctttataacattcttctcaagcttatctcaaaggttatggtttgaagaattagaccccat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40543045 |
taataaacctcaaagtttgatggcctttaggacgactatcctttataacattcttctcaagcttatctcaaaggttatggtttgaagaattagaccccat |
40543144 |
T |
|
| Q |
116 |
ttgaagaatcttattggtcttgtcaacgtagttttattccaaacaaaggtattgatgatcaagaannnnnnngttacatgcatacaaagaaaggtaaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
40543145 |
ttgaagaatcttattggtcttgtcaacgtagttttattccaaacaatggtattgatgatcaagaatttttttgttgcatgcatacaaagaaaggtaaatt |
40543244 |
T |
|
| Q |
216 |
tccttttcttatgtgtaaaattgattttgataaggaatatgaaagtgtgtactggaattttcaaagctcatgttgtcggaatttggtttttctcctattg |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40543245 |
tccttttcttatgtgtaaaattgattttgataaggaatatgaaagtgtgtactggaatttccaaagctcatgttgtcggaatttggtttttctcctattg |
40543344 |
T |
|
| Q |
316 |
tctttaatcttatcatgagttgcac |
340 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40543345 |
tctttaatcttatcatgagttgcac |
40543369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University