View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_low_21 (Length: 243)
Name: NF18136_low_21
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 23606533 - 23606775
Alignment:
| Q |
1 |
ctctgtgtaatgtgtctggatctttgttcttccttttgttttccttattttaaggatttcatgaactttaattttagcctagcgtcgtagcttacaaaaa |
100 |
Q |
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| T |
23606533 |
ctctgtgtaatgtgtctgtatctttgttcttctttttgttttccttcttttaaggatttcatgaactttaattttagcctagcgtcgtagcttacaaaaa |
23606632 |
T |
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| Q |
101 |
gaacattccctcaaatatatatcaagatttaatttctatatatcgatgatggtttannnnnnnacatatctttttagatatgttatgtgtaggtgtaaaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
23606633 |
gaacattccctcaaatatatatgaagatttaatttctatatatcgatgatggtttatttttttacatatctttttagatatgttaagtgtaggtgtaaaa |
23606732 |
T |
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| Q |
201 |
gcattttatcgtaggtgcatataaattaacctcaatatataaa |
243 |
Q |
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|||||||| |||| ||||||| ||||||||||| ||||||||| |
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| T |
23606733 |
gcattttaccgtaagtgcatagaaattaacctctatatataaa |
23606775 |
T |
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