View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_low_24 (Length: 216)
Name: NF18136_low_24
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_24 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 216
Target Start/End: Complemental strand, 19211 - 19010
Alignment:
| Q |
15 |
gaagaactatgggaacttgtccatattatggctctagaagcatggttcggagagttgatctcgtggtcctaccatatcaatctcttctttcaaaatcatc |
114 |
Q |
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| T |
19211 |
gaagaactatgggaacttgtccatattatggctctagaagcatggttcggagagttgatctcgtggtcctaccatatcaatctcttctttcaaaatcatc |
19112 |
T |
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| Q |
115 |
tcgtgaagcacttggtctgaatttgaaatcaaacattgttataatagacgaggctcataatttggctgattcactcagcaacatgtatgactccaaactt |
214 |
Q |
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| T |
19111 |
tcgtgaagcacttggtctgaatttgaaatcaaacattgttataatagacgaggctcataatttggctgattcactcatcaacatgtatgactccaaactt |
19012 |
T |
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| Q |
215 |
ac |
216 |
Q |
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|| |
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| T |
19011 |
ac |
19010 |
T |
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