View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_low_26 (Length: 214)
Name: NF18136_low_26
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 24854495 - 24854676
Alignment:
| Q |
19 |
aaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattaaggttcataaatcttaaaagcc |
118 |
Q |
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| T |
24854495 |
aaataatatgctacgattgtataaacagtctgcacaacaatggaaacagagagcagcgtggcaacaaagttgtaattacggttcataaatcttaaaagcc |
24854594 |
T |
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| Q |
119 |
atttatgacgatggtatgtgaatgaattcaacactattttccagattctttgaatg-ataatgcctcggagtatttgttcat |
199 |
Q |
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| T |
24854595 |
atttatgacgatggtatgtgaatgaattcaacactattttccagattctttgaatgaaaaatgcctcggactaattgttcat |
24854676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 24537894 - 24537746
Alignment:
| Q |
18 |
aaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattaaggttcataaatcttaaaagc |
117 |
Q |
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| T |
24537894 |
aaaattataggctaggattgcataaactgtctgcacaacagtgagaatagagagaaccgttgcaacgaagttgtaattgcggttcataaatctaaacagc |
24537795 |
T |
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| Q |
118 |
catttatgacgatggtatgtgaatgaattcaacactattttccagattc |
166 |
Q |
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| T |
24537794 |
cacccatgatgacggtatgtgaatgaactcgacactattttccagattc |
24537746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 24797369 - 24797516
Alignment:
| Q |
18 |
aaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattaaggttcataaatcttaaaagc |
117 |
Q |
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| T |
24797369 |
aaaattataggctaggattgcataaactgtctgcacaacagtgagaataaagagaaccgttgcaacgaagttgtaattggggttcaaaaatcttaacagc |
24797468 |
T |
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| Q |
118 |
catttatgacgatggtatgtgaatgaattcaacactattttccagatt |
165 |
Q |
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| T |
24797469 |
caccaatgatgccggtatgtgaatgaactcgacactattttccagatt |
24797516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 24726604 - 24726707
Alignment:
| Q |
18 |
aaaataatatgctacgattgcataaacagtttgtacaacaacggaaacagagagcagcgtggcaacaaagttgtaattaaggttcataaatcttaaaagc |
117 |
Q |
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|||||||||||| | ||||| ||||||||| || |||||| || |||||||| || | | ||||| ||||||||||| | |||| |||| |||||||| |
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| T |
24726604 |
aaaataatatgcgaggattgtataaacagtctgcacaacagcgagaacagagaccaccattgcaacgaagttgtaattgcgattcagaaatgttaaaagc |
24726703 |
T |
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| Q |
118 |
catt |
121 |
Q |
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|||| |
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| T |
24726704 |
catt |
24726707 |
T |
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