View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_low_27 (Length: 214)
Name: NF18136_low_27
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 26633932 - 26633755
Alignment:
| Q |
25 |
taggaaggtggcgcagagccacctccggcatcgtgaccgtaccctccagacatgattcgatctagggttcgctactaccacaagagagaaactgagannn |
124 |
Q |
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| T |
26633932 |
taggaaggtggcgcagagccacctccggcatcgtgaccgtaccctccagacatgattcgatctagggttcgctactaccacaagagagaaactgagattt |
26633833 |
T |
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| Q |
125 |
nnnngtgtagtgaagcttctgaaa---tattgtagaatgtaactgtgaaatattgggcctttccgttttaacaaagga |
199 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26633832 |
ttttgtgtagtgaagcttctgaaatattattgtagaatgtaactgtgaaatattgggcctttccgttttaacaaagga |
26633755 |
T |
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