View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_low_3 (Length: 743)
Name: NF18136_low_3
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 623; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 25 - 734
Target Start/End: Complemental strand, 10370680 - 10369982
Alignment:
| Q |
25 |
cttacacatgcatctaatcatatcaaatcattttatcactttgttataatagtttctaaactatcttcttagatatctatgtggtaaaaatgtgatggga |
124 |
Q |
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| T |
10370680 |
cttacacatgcatctaatcatatcaaatcattttatcactttgttataatagtttctaaattatcttcttagatatctatgtggtaaaaatgtgatggga |
10370581 |
T |
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| Q |
125 |
taaatatgatatatgcatgccatcacaactgtgaaaatctcataattcagactccgttaccacaatttaaaacttcaattatacacctaaccttagtctt |
224 |
Q |
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| T |
10370580 |
taaatatgacatatgcatgccatcacaactgtgaaaatctcataattcagactccgttaccacaatttaaaacttcaattatacacctaaccttagtctt |
10370481 |
T |
|
| Q |
225 |
ctgaaataattaagcttcatatattagggttcataataatataataactatgatatatactaatcctgataggaacaaattcagagatgatgcttgatgc |
324 |
Q |
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| T |
10370480 |
ctgaaataattaagcttcatatattagggttcataataatataataactatgatatatactaatcctaataggaacaaattcagagatgatggttgatgc |
10370381 |
T |
|
| Q |
325 |
tcaattgaaacctattataaaccctaatacatgctaatgacaatttattgtaggattcgattcataacactgccagccaatcacgatcgttaaatcattn |
424 |
Q |
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| T |
10370380 |
tcaattgaaacctattataaaccctaatacatgctaatgacaatttattgtaggattcgattcataacactgccagccaatcacgatcgttaaatcatta |
10370281 |
T |
|
| Q |
425 |
nnnnnngttaattagctttttataattacttctaaaatcgcacatatgattgattgtgaattgatgattattttcacaggtcatgaagtggtcccttatg |
524 |
Q |
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| T |
10370280 |
aaaaaaattaattagctttttataattacttctaaaatcacacatatg-----------attgatgattattttcacaggtcatgaagtggtcccttatg |
10370192 |
T |
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| Q |
525 |
agagtccacgaccttcgatgggaattcatcgcatcgtctttgtgatttttcgtcaacttggtagagagacggtttatgctccaggttggcgacagaattt |
624 |
Q |
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| T |
10370191 |
agagtccacgaccttcgatgggaattcatcgcatcgtctttgtgatttttcgtcaacttggtagagagacggtttatgctccaggttggcgacagaattt |
10370092 |
T |
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| Q |
625 |
caacactagagaatttgcagaactttacaatttgggattgccagttgctgctgcttattttaatattcaaagggaacatggctctggtggaagaaggtta |
724 |
Q |
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| T |
10370091 |
caacactagagaatttgcagaactttacaatttgggattgccagttgctgctgcttattttaacattcaaagggaacatggctctggtggaagaaggtta |
10369992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 595 - 677
Target Start/End: Original strand, 32845156 - 32845238
Alignment:
| Q |
595 |
ggtttatgctccaggttggcgacagaatttcaacactagagaatttgcagaactttacaatttgggattgccagttgctgctg |
677 |
Q |
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| T |
32845156 |
ggtttatgctccaggatggcgacaaaatttcaacacaagagaatttgctgaactctacaatcttggatcacctgttgctgctg |
32845238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 446 - 492
Target Start/End: Original strand, 45936011 - 45936057
Alignment:
| Q |
446 |
ataattacttctaaaatcgcacatatgattgattgtgaattgatgat |
492 |
Q |
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|||| |||||||||| ||| |||||||||||||||||||||| |||| |
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| T |
45936011 |
ataactacttctaaactcgtacatatgattgattgtgaattgttgat |
45936057 |
T |
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