View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18136_low_5 (Length: 567)
Name: NF18136_low_5
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_5 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 51 - 494
Target Start/End: Original strand, 12196578 - 12197017
Alignment:
| Q |
51 |
ttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatctcgaagcttaatcagttcacaagtctgac |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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|
| T |
12196578 |
ttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttttttccatctcgaagctttatcagttcacaagtctgac |
12196677 |
T |
|
| Q |
151 |
tcttctcaatagattttagttcatctatcatagcttccttcaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctcgcattgt |
250 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
12196678 |
tcttctcaatagattttagttcacctatcatagcttcctttaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctagcattgc |
12196777 |
T |
|
| Q |
251 |
aaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtggtctggct |
350 |
Q |
| |
|
|||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
12196778 |
aaaatgcaccaattaaccatcactag----ttcatcatcaccagttacctgacagtcttctgaacttcttggaatttgtctgtttctttgtggtctggct |
12196873 |
T |
|
| Q |
351 |
atagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacctgcttct |
450 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
12196874 |
atagtggttgactcttcatctatgatttcttcatcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacctccttct |
12196973 |
T |
|
| Q |
451 |
cagagacactgcacttgtttgcagtacaatcccaatattcatct |
494 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
12196974 |
cagagacactgcacttatttgcagtacaatcccaatattcatct |
12197017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 144 - 567
Target Start/End: Complemental strand, 33684402 - 33683979
Alignment:
| Q |
144 |
gtctgactcttctcaatagattttagttcatctatcatagcttccttcaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctc |
243 |
Q |
| |
|
|||||| ||||||||||||| || | ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |||||| |
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| T |
33684402 |
gtctgattcttctcaatagaattcaactcatctatcatagcttccttccatttattatcacatagtgcagctttgtaatctaatggctcagagtctgcaa |
33684303 |
T |
|
| Q |
244 |
gcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtgg |
343 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||| |||||||||| ||| ||||| || | || || |||| |||||| ||||||||| ||| |
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|
| T |
33684302 |
gcatttcaaaatgcaccaattcaccattagaacctacttcatcatcaccagatacttgacaatcctgcaatctcattgggatttgtttgtttctttatgg |
33684203 |
T |
|
| Q |
344 |
tctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacc |
443 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| ||||| | |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| |
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|
| T |
33684202 |
tctggctatagtggttggctcctcatctaatatttattctttaatagcttcttcattgatggtaagctcatcagtttctttattatcttcaatgataact |
33684103 |
T |
|
| Q |
444 |
tgcttctcagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggat |
543 |
Q |
| |
|
||||||||||| |||||||| | |||| | | |||||||||||||| || ||||| || ||||||| ||||| || |||||||||||||| |||| || |
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|
| T |
33684102 |
tgcttctcagacacactgcattcatttgaattccaatcccaatattcttcctctaaaacattcacatctctactaattgcaattttcttagagtgtgaat |
33684003 |
T |
|
| Q |
544 |
caagcaatctatatgctctagtat |
567 |
Q |
| |
|
||| |||||||||||||| ||||| |
|
|
| T |
33684002 |
caaacaatctatatgctccagtat |
33683979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 144 - 567
Target Start/End: Complemental strand, 33701456 - 33701033
Alignment:
| Q |
144 |
gtctgactcttctcaatagattttagttcatctatcatagcttccttcaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctc |
243 |
Q |
| |
|
|||||| ||||||||||||| || | ||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
33701456 |
gtctgattcttctcaatagaattcaactcatctatcatagcttccttccatttattatcacatagtgcagctttgtaatctaatggctcagagtctgcaa |
33701357 |
T |
|
| Q |
244 |
gcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtgg |
343 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||| |||||||||| ||| ||||| || | || || |||| |||||| ||||||||| ||| |
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|
| T |
33701356 |
gcatttcaaaatgcaccaattcaccattagaacctacttcatcatcaccagatacttgacaatcctgcaatctcattgggatttgtttgtttctttatgg |
33701257 |
T |
|
| Q |
344 |
tctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacc |
443 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||| ||||| | |||| ||||||| ||||| |||||||||| |||| ||||||||||||||||||| |
|
|
| T |
33701256 |
tctggctatagtggttggctcctcatctaatatttattctttaatagcttcttcattgatggtaagctcatcagtttctttattatcttcaatgataact |
33701157 |
T |
|
| Q |
444 |
tgcttctcagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggat |
543 |
Q |
| |
|
||||||||||| |||||||| | |||| | | |||||||||||||| || ||||| || ||||||| ||||| || |||||||||||||| |||| || |
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|
| T |
33701156 |
tgcttctcagacacactgcattcatttgaattccaatcccaatattcttcctctaaaacattcacatctctactaattgcaattttcttagagtgtgaat |
33701057 |
T |
|
| Q |
544 |
caagcaatctatatgctctagtat |
567 |
Q |
| |
|
||| |||||||||||||| ||||| |
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|
| T |
33701056 |
caaacaatctatatgctccagtat |
33701033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 3e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 51 - 324
Target Start/End: Original strand, 6372576 - 6372849
Alignment:
| Q |
51 |
ttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatctcgaagcttaatcagttcacaagtctgac |
150 |
Q |
| |
|
|||||||||||||| || | || ||||| |||||||| ||| |||| | ||||||||| ||||||| |||| |||||| || | |||| ||||||| | |
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|
| T |
6372576 |
ttcacaatcttcccgtcagggttcaatttaaacttgaagacccatttgacatctattgctttctttcaatctagaagctgaaacggttcccaagtcttat |
6372675 |
T |
|
| Q |
151 |
tcttctcaatagattttagttcatctatcatagcttccttcaatgccttatcacatagtgcagctatgtaatctaatggctcgatgtctgctcgcattgt |
250 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| | |||||||||||||| |||||||| |||||| |
|
|
| T |
6372676 |
tcttctcaatagattttagttcatctattatagcttccttccatttcttatcacatagtgcagctttataatctaatggctcagtgtctgctagcattgc |
6372775 |
T |
|
| Q |
251 |
aaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaa |
324 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||| |||||||| ||| ||||| || || ||||||| |
|
|
| T |
6372776 |
gaaatgcaccaattcaccatcactgcctacttcatcatcactagttacctaacaatcttccaatctccttggaa |
6372849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 10332848 - 10332540
Alignment:
| Q |
1 |
taaatcctaccttcgaaaagaattctttagcaacaagcctgaatttgtgcttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttat |
100 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| ||||||||| |||||||||||||||||||||||| | || ||||| | ||| |||||| |||| | |
|
|
| T |
10332848 |
taaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaaggttcaatttcagcttaaaaacccatttgaa |
10332749 |
T |
|
| Q |
101 |
atctattgccttctttccatctcgaagcttaatcagttcacaagtctgactcttctcaatagattttagttcatctatcatagcttccttcaatgcctta |
200 |
Q |
| |
|
||| ||||| ||||||||| | ||||||| || ||||| || || ||| ||||||||||||| ||||||||||||||||| ||| ||| |||| ||| |
|
|
| T |
10332748 |
atcaattgctttctttccaccaggaagcttgattagttc-catgtttgattcttctcaatagacattagttcatctatcatatcttatttccatgcttta |
10332650 |
T |
|
| Q |
201 |
tcacatagtgcagctatgtaatctaatggctcgatgtctgctcgcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacct |
300 |
Q |
| |
|
||||| | |||| || | ||||||| | |||| | |||||| ||||| ||| || |||| ||||||||||| |||||||| |||||| ||||| || |
|
|
| T |
10332649 |
tcacacattgcaactttctaatctacttgctcaaaatctgctaacattgcaaagtgtaccagctcaccatcacttcctacttcatcatcaggagttagct |
10332550 |
T |
|
| Q |
301 |
gacagtcttc |
310 |
Q |
| |
|
|| ||||||| |
|
|
| T |
10332549 |
gatagtcttc |
10332540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 244 - 561
Target Start/End: Complemental strand, 14639644 - 14639327
Alignment:
| Q |
244 |
gcattgtaaaatgcaccaattcaccatcactacctacttcttcatcaccagttacctgacagtcttctaaacttcttggaatttgtctgtttctttgtgg |
343 |
Q |
| |
|
|||||| ||||||||| || ||||||||| ||||| || ||||||| |||||| ||||| || | || || ||| | |||||| ||||||||||||| |
|
|
| T |
14639644 |
gcattgcaaaatgcactaactcaccatcagaacctatctcatcatcacaagttacttgacaatcctgcaatctccttagcatttgtttgtttctttgtgg |
14639545 |
T |
|
| Q |
344 |
tctggctatagtggttgactcttcatctaagatttcttcttcattagcaacttcatttatggtgagctcatcagattctctattatcttcaatgataacc |
443 |
Q |
| |
|
|||||||||||| |||| ||| |||| | | | ||||| | || | |||||||| || ||||||||||| || | |||| |||||||||||| |
|
|
| T |
14639544 |
tctggctatagttgttggctcctcatatgatacctcttcagaaataacttcttcatttgtgagaagctcatcagactccttcttattttcaatgataaca |
14639445 |
T |
|
| Q |
444 |
tgcttctcagagacactgcacttgtttgcagtacaatcccaatattcatcttctaagactttcacatacctactgatagcaattttcttagattgtggat |
543 |
Q |
| |
|
| || ||| | |||||||| | |||| | | |||||||| ||||| || ||||| |||||||||| ||| | || | ||| |||||||| ||| ||| |
|
|
| T |
14639444 |
tttttttcatacacactgcattcatttgaattccaatcccagtattcttcctctaacactttcacatctctaattattgaaatcttcttagagtgtagat |
14639345 |
T |
|
| Q |
544 |
caagcaatctatatgctc |
561 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
14639344 |
caagcaatctataagctc |
14639327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 171
Target Start/End: Complemental strand, 14639796 - 14639669
Alignment:
| Q |
44 |
tttgtgcttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatctcgaagcttaatcagttcacaa |
143 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| ||||| || ||| |||| | ||||||||| ||||| ||||| || ||||||| ||| || |
|
|
| T |
14639796 |
tttgtgcttcacaatcttcccttcaggattcaatttcaacttaaagacccatttaacatctattgctttcttaccatcagatagtttaatcaattcccat |
14639697 |
T |
|
| Q |
144 |
gtctgactcttctcaatagattttagtt |
171 |
Q |
| |
|
|||||| ||||| || |||||||||||| |
|
|
| T |
14639696 |
gtctgattcttcccactagattttagtt |
14639669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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