View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_low_6 (Length: 561)
Name: NF18136_low_6
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 545
Target Start/End: Complemental strand, 1320267 - 1319723
Alignment:
| Q |
1 |
aaatcttttgacaaaagatcaatgcagataggctacaaatggaaacaatattttaaaattagacattgtgagtatattttttctgactttgtagattgtt |
100 |
Q |
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| T |
1320267 |
aaatcttttgacaaaagatcaatgcagataggctacaaatggaaacaatattttaaaattagacattgtgagtatattttttctgactttttagattgtt |
1320168 |
T |
|
| Q |
101 |
ctcaaatagaattataacgttaatattttaaatatggtcatgactcttgacaaaatttacttatataatctttatgataaatgttagagactaaattgat |
200 |
Q |
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| T |
1320167 |
ctcaaatagaattataacgttaatattttaaaaatggtcatgactcttgacgaaatttacttatataatctttatgataaatgttagagactaaattgat |
1320068 |
T |
|
| Q |
201 |
aactaagccctagttaattttttaaatataattacctgatgatagttaatagtaaatggttaaatacaaagagcaacttaacaatctaatag--attttg |
298 |
Q |
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| T |
1320067 |
aactaa-acctagttaattttttaaatataatgacctgatgataattaatagtaaatggttaaatacaaatagcaacttaacaatctaatagtttttttt |
1319969 |
T |
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| Q |
299 |
tttttgaaagattaacaatctaatagatagaatcaaatgatcgttttaaaaaattcataatc-tataaacctattttgagaacgcaaaatcatggactaa |
397 |
Q |
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| T |
1319968 |
tttttgaaagattaacaatctaatagatagaatcaaatgatcgttttaaaaaattcataatcttataaacctattttgagaacgcaaaatcatggactaa |
1319869 |
T |
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| Q |
398 |
ttggtttactttacacacataattttagtgtctcgatgtccttttaggtcgttaacaacttgtcagaactagctatatgacttgaatataaaatatacat |
497 |
Q |
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| T |
1319868 |
ttggtttactttacacacataattttagtgtctcgatatccttttaggtcgttaacaacttgtcagaactagctatatgacttgaatataaaatatacat |
1319769 |
T |
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| Q |
498 |
acaggacaaacttggaatttcccatcacaacattttacatgtataaat |
545 |
Q |
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| T |
1319768 |
acaggacaaacttggaatttcccatcacaaca--ttacatgtataaat |
1319723 |
T |
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