View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18136_low_9 (Length: 407)
Name: NF18136_low_9
Description: NF18136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18136_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 23 - 151
Target Start/End: Complemental strand, 3677876 - 3677747
Alignment:
| Q |
23 |
aaaatgattgcccctataagctgttgtataatccattttccatgagcgatggatggaagtggttgtggattagattaatttgttcaccactttaaact-t |
121 |
Q |
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| T |
3677876 |
aaaatgattgcccctataagcctttgtataatccattttccatgagcgatggatggaagtggttgtggattagattaatttgttcaccactttaaacttt |
3677777 |
T |
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| Q |
122 |
tttctttgaccttccaatcatattacactc |
151 |
Q |
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| T |
3677776 |
tttctttgaccttccaatcatattacactc |
3677747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 3677719 - 3677616
Alignment:
| Q |
179 |
cttacactagattcaaaatataatacctaaaacccttctaaagtccttggctgtattgatattgaggtaggcgtatttgattgcgtttctacgactctat |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3677719 |
cttacactagattcaaaatataatacctaaaacccttctaaagtccttggctgtattgatattgaggtaggcgtatttgattgcgtttatacgactctat |
3677620 |
T |
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| Q |
279 |
gaac |
282 |
Q |
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|||| |
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| T |
3677619 |
gaac |
3677616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 324 - 397
Target Start/End: Complemental strand, 3677574 - 3677501
Alignment:
| Q |
324 |
attccaagatcaaaccctattatatatgaacatgccttgcttgaagttctatcttctagaagctgtaccctttg |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3677574 |
attccaagatcaaaccctattatatatgaacatgccttgcttgaagttctatcttctagaagctgtaccctttg |
3677501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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