View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18137_high_10 (Length: 237)

Name: NF18137_high_10
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18137_high_10
NF18137_high_10
[»] chr4 (4 HSPs)
chr4 (5-223)||(4104039-4104261)
chr4 (5-56)||(35184867-35184918)
chr4 (144-223)||(35185329-35185408)
chr4 (112-144)||(35185104-35185136)
[»] chr5 (2 HSPs)
chr5 (5-223)||(21301143-21301363)
chr5 (144-223)||(137183-137262)
[»] chr8 (5 HSPs)
chr8 (5-223)||(15333794-15334014)
chr8 (5-223)||(15514163-15514383)
chr8 (5-223)||(15422890-15423110)
chr8 (5-223)||(18802726-18802946)
chr8 (5-184)||(14979957-14980134)
[»] chr6 (1 HSPs)
chr6 (5-223)||(14963355-14963575)
[»] scaffold0464 (2 HSPs)
scaffold0464 (5-223)||(3435-3656)
scaffold0464 (138-223)||(3720-3805)
[»] chr1 (2 HSPs)
chr1 (144-223)||(1393930-1394009)
chr1 (112-144)||(1393708-1393740)
[»] chr7 (1 HSPs)
chr7 (5-35)||(48631059-48631089)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 4104039 - 4104261
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn----ttagaagttgatatctacaagagtcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||| |||||||||    
T  4104039 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttaaaaaaaaaaaattagaagttgatatctgcaagagtcc 4104138  T
Q  101 ttagacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnnga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||    
T  4104139 ttagacttgtctttgtataactgctatgactggctcatttttgtcattactaaatgttgtgtttttacttgtatcttgacaactctagtgctttttttga 4104238  T
Q  201 gcaatacaagtactcgaatattg 223  Q
    |||||||||||||| ||||||||    
T  4104239 gcaatacaagtacttgaatattg 4104261  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 35184867 - 35184918
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacat 56  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  35184867 gcaaaattcgagagacaaagaggtaacttttacaaaactattgcaaaaacat 35184918  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 35185329 - 35185408
Alignment:
Q  144 tcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagcaatacaagtactcgaatattg 223  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||||       ||| |||||||||||||||||||||    
T  35185329 tcattactgaatgttgtgtttttacttttatcttgacaactctggtgctttttttgagtaatacaagtactcgaatattg 35185408  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 35185104 - 35185136
Alignment:
Q  112 tttgtataactgctatgactggctcatttttgt 144  Q
    |||||||||||||||| ||||||||||||||||    
T  35185104 tttgtataactgctattactggctcatttttgt 35185136  T

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Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 5 - 223
Target Start/End: Complemental strand, 21301363 - 21301143
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn--ttagaagttgatatctacaagagtcctt 102  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| ||||| |||||    
T  21301363 gcaaaattcaagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttaaaaaaaaaattagaagttgatatctgcaagattcctt 21301264  T
Q  103 agacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagc 202  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       |||     
T  21301263 agacttgtctttgtataactgctatgactgactcatttttgtcattactgaatgttgtgtttttacttgtatcttgacaactctagtgctttttttgaga 21301164  T
Q  203 aatacaagtactcgaatattg 223  Q
    |||||||||||||||||||||    
T  21301163 aatacaagtactcgaatattg 21301143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 137183 - 137262
Alignment:
Q  144 tcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagcaatacaagtactcgaatattg 223  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||||        ||||||||||||||||||||||||    
T  137183 tcattactgaatgttgtgtttttacttttatcttgacaactctggtgcttttttttagcaatacaagtactcgaatattg 137262  T

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Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 15333794 - 15334014
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn--ttagaagttgatatctacaagagtcctt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| || ||||||||| |||||||||||    
T  15333794 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttaaaaataaaattataatttgatatctgcaagagtcctt 15333893  T
Q  103 agacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagc 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||  |||       ||||    
T  15333894 agacttgtctttgtataactgctatgaccggctcatttttgtcactactgaatgttgtgtttttacttgtatcttgacaactctgatgctttttttgagc 15333993  T
Q  203 aatacaagtactcgaatattg 223  Q
    |||||||||||||||||||||    
T  15333994 aatacaagtactcgaatattg 15334014  T

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Target: chr8; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 15514163 - 15514383
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn--ttagaagttgatatctacaagagtcctt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| || ||||||||| |||||||||||    
T  15514163 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttaaaaataaaattataatttgatatctgcaagagtcctt 15514262  T
Q  103 agacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagc 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||  |||       ||||    
T  15514263 agacttgtctttgtataactgctatgaccggctcatttttgtcactactgaatgttgtgtttttacttgtatcttgacaactctgatgctttttttgagc 15514362  T
Q  203 aatacaagtactcgaatattg 223  Q
    |||||||||||||||||||||    
T  15514363 aatacaagtactcgaatattg 15514383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 15422890 - 15423110
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn--ttagaagttgatatctacaagagtcctt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||| || ||||||||| |||||||||||    
T  15422890 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttaaaaataaaattataaattgatatctgcaagagtcctt 15422989  T
Q  103 agacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagc 202  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||||||||||||||  |||       ||||    
T  15422990 agacttgtctttgtataactgctatgaccggctcatttttgtcactactgaatgttatgtttttacttgtatcttgacaactctgatgctttttttgagc 15423089  T
Q  203 aatacaagtactcgaatattg 223  Q
    |||||||||||| ||||||||    
T  15423090 aatacaagtactagaatattg 15423110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 18802726 - 18802946
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn--ttagaagttgatatctacaagagtcctt 102  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||| ||    
T  18802726 gcaaaattctagagacaaagaggtaactcttaccaaactattgcaaaaacatcttctcttttaaaaataaaattagaagttgatatctacaagagtcttt 18802825  T
Q  103 agacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagc 202  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||||||||  |||  |||       ||||    
T  18802826 agacttgtctttgtataactgctatgactggcttatttttgtcactactgaatgttgtgtttttacctgtatcttgacacttctgatgctttttttgagc 18802925  T
Q  203 aatacaagtactcgaatattg 223  Q
    |||||||||||||||||||||    
T  18802926 aatacaagtactcgaatattg 18802946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 5 - 184
Target Start/End: Complemental strand, 14980134 - 14979957
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn-ttagaagttgatatctacaagagtcctta 103  Q
    |||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||         ||||||||||||||||  |||||||||||    
T  14980134 gcaaaattctagagacaaagaggtac--tttaccaaactattgcaaaaacatcttctcttttaaaaaaaaattagaagttgatatctgtaagagtcctta 14980037  T
Q  104 gacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaact 184  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  14980036 gacttgtctttgtataactgctatgact-gctcatttttgtcattactgaatgttgtgtttttacttgtatcttgacaact 14979957  T

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Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 14963355 - 14963575
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn--ttagaagttgatatctacaagagtcctt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||| |||||||| ||    
T  14963355 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttaaaaataaaattagaagttgatatctgcaagagtcttt 14963454  T
Q  103 agacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagc 202  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||  ||||||||||||  |||  |||       ||||    
T  14963455 agacttgtctttgtataactgctatgactggcttatttttgtcactactgaatgttgtgtttttaactgtatcttgacacttctgatgctttttttgagc 14963554  T
Q  203 aatacaagtactcgaatattg 223  Q
    |||||||||||||||||||||    
T  14963555 aatacaagtactcgaatattg 14963575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 3435 - 3656
Alignment:
Q  5 gcaaaattctagagacaaagaggtaacttttaccaaactattgcaaaaacatcttctcttttnnnnnnnn---ttagaagttgatatctacaagagtcct 101  Q
    ||||||||||||||||| || ||||| ||||||||||||||| |||||||||||||| ||||           |||||||||||||||| ||||||||||    
T  3435 gcaaaattctagagacagagtggtaatttttaccaaactatttcaaaaacatcttcttttttaaaaaaaaaaattagaagttgatatctgcaagagtcct 3534  T
Q  102 tagacttgtctttgtataactgctatgactggctcatttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngag 201  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||       |||    
T  3535 tagacttgtatttgtataactgctatgattggctcatttttgtcattactgaatgttttgtttttacttgtatcttgacaactctggtgctttttttgag 3634  T
Q  202 caatacaagtactcgaatattg 223  Q
    ||||||||||||||||||||||    
T  3635 caatacaagtactcgaatattg 3656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 3720 - 3805
Alignment:
Q  138 tttttgtcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagcaatacaagtactcgaatattg 223  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| ||||        | ||||||||||||||||||||||    
T  3720 tttttgtcattactgaatgttgtgtttttacttgtatcttgacaactctggtgcttttttttaccaatacaagtactcgaatattg 3805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 223
Target Start/End: Original strand, 1393930 - 1394009
Alignment:
Q  144 tcattacttaatgttgtgtttttacttgtatcttgacaactctagtgcnnnnnnngagcaatacaagtactcgaatattg 223  Q
    |||||||| |||||||||||||||||| ||||||||||||||| ||||       |||||||||||||||||||| ||||    
T  1393930 tcattactgaatgttgtgtttttacttttatcttgacaactctggtgctttttttgagcaatacaagtactcgaacattg 1394009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 1393708 - 1393740
Alignment:
Q  112 tttgtataactgctatgactggctcatttttgt 144  Q
    |||||||||||||||||||||||||||||||||    
T  1393708 tttgtataactgctatgactggctcatttttgt 1393740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 35
Target Start/End: Original strand, 48631059 - 48631089
Alignment:
Q  5 gcaaaattctagagacaaagaggtaactttt 35  Q
    |||||||||||||||||||||||||||||||    
T  48631059 gcaaaattctagagacaaagaggtaactttt 48631089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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