View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18137_high_6 (Length: 293)
Name: NF18137_high_6
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18137_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 101 - 285
Target Start/End: Original strand, 39479518 - 39479702
Alignment:
| Q |
101 |
attgacttttcacgtttggaagatgaagatgatgtgttattgcttgaccatgtgagacaacatcattttagtaattatgggttcatgatctccttgtttg |
200 |
Q |
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| T |
39479518 |
attgacttttcacgtttggaagatgaagatgatgtgttattgcttgaccatgtgagacaacatcattttagtaattatgagttcatgatctccttgtttg |
39479617 |
T |
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| Q |
201 |
ctcctctttgtgactttcctgttgtttctcatttgtacgaacatgcttggaacttgtgcttatgcattcctatttttgatgatgt |
285 |
Q |
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| T |
39479618 |
ctcctctttgtgcctttcttgttgtttctcatttgtacgaacatgcttggaacttgtgcttatgcattcctatttttgatgatgt |
39479702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 37776414 - 37776471
Alignment:
| Q |
101 |
attgacttttcacgtttggaagatgaagatgatgtgttattgcttgaccatgtgagac |
158 |
Q |
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| T |
37776414 |
attgacttttcacgtttggaagaggaagatgatgtgctgttgcttgaccatgtaagac |
37776471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 40438796 - 40438739
Alignment:
| Q |
112 |
acgtttggaagatgaagatgatgtgttattgcttgaccatgtgagacaacatcatttt |
169 |
Q |
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| T |
40438796 |
acgtttgaaagatgaagacgatgttttgttgctttaccatgtgagacaacatcatttt |
40438739 |
T |
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