View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18137_low_1 (Length: 1798)

Name: NF18137_low_1
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18137_low_1
NF18137_low_1
[»] chr1 (6 HSPs)
chr1 (103-1790)||(3451391-3453078)
chr1 (569-618)||(26462653-26462702)
chr1 (103-134)||(3451343-3451374)
chr1 (576-626)||(3148159-3148209)
chr1 (569-635)||(43328469-43328535)
chr1 (573-629)||(26777374-26777431)
[»] chr3 (11 HSPs)
chr3 (1418-1512)||(48697978-48698072)
chr3 (1059-1173)||(48698252-48698366)
chr3 (1658-1785)||(48697682-48697809)
chr3 (569-632)||(18267999-18268062)
chr3 (575-629)||(49636823-49636877)
chr3 (562-625)||(53791953-53792016)
chr3 (569-618)||(19323456-19323505)
chr3 (575-631)||(2988934-2988990)
chr3 (569-629)||(47542537-47542597)
chr3 (575-625)||(42748405-42748455)
chr3 (569-618)||(13725310-13725359)
[»] chr5 (6 HSPs)
chr5 (577-629)||(28322251-28322303)
chr5 (585-626)||(40141299-40141340)
chr5 (575-626)||(15086706-15086757)
chr5 (567-630)||(42370145-42370207)
chr5 (596-629)||(17535650-17535683)
chr5 (596-633)||(29200792-29200829)
[»] chr4 (5 HSPs)
chr4 (575-619)||(2796554-2796598)
chr4 (579-624)||(1386533-1386578)
chr4 (573-625)||(20119951-20120003)
chr4 (573-625)||(31277025-31277077)
chr4 (573-611)||(32369927-32369965)
[»] chr6 (10 HSPs)
chr6 (579-677)||(4012732-4012829)
chr6 (569-623)||(6294539-6294593)
chr6 (569-683)||(10760787-10760898)
chr6 (575-629)||(6284658-6284712)
chr6 (573-619)||(34625740-34625786)
chr6 (577-624)||(6074523-6074570)
chr6 (569-620)||(8923278-8923329)
chr6 (580-618)||(32577472-32577510)
chr6 (573-619)||(34598544-34598590)
chr6 (592-625)||(24821698-24821731)
[»] chr7 (9 HSPs)
chr7 (569-626)||(46179910-46179967)
chr7 (572-635)||(44172881-44172944)
chr7 (578-624)||(31837762-31837808)
chr7 (570-631)||(7139436-7139497)
chr7 (582-635)||(22636456-22636509)
chr7 (569-618)||(23948394-23948443)
chr7 (574-635)||(30013202-30013263)
chr7 (568-629)||(31808506-31808567)
chr7 (569-629)||(34399893-34399954)
[»] chr2 (3 HSPs)
chr2 (577-631)||(35198226-35198280)
chr2 (577-618)||(8765409-8765450)
chr2 (569-618)||(28369813-28369862)
[»] chr8 (1 HSPs)
chr8 (575-629)||(3066050-3066104)


Alignment Details
Target: chr1 (Bit Score: 1612; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 1612; E-Value: 0
Query Start/End: Original strand, 103 - 1790
Target Start/End: Original strand, 3451391 - 3453078
Alignment:
Q  103 gtgtatatgcttattattcctgtctcccatatcttcatagataagaaaactagtactagttcaattatgccttttttgtccatgtcgtgtgatcttcaac 202  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  3451391 gtgtatatgcttattattcctttctcccatatcttcatagataagaaaactagtactagttcgattatgccttttttgtccatgtcgtgtgatcttcaac 3451490  T
Q  203 actcttgttctgatcatgttcacgagcacgcgaaacatcttctaccaatctcttctgctaatcaaattgtcacacatgcacacaaggcctccacattcta 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3451491 actcttgttctgatcatgttcacgagcacgcgaaacatcttctaccaatctcttctgctaatcaaattgtcaaacatgcacacaaggcctccacattcta 3451590  T
Q  303 ccacttttcactctctatagccaagcttggcatgattaacatatatgccacagcttgagagggatatagtattaactgatatagctcatcgttggttagt 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3451591 ccacttttcactctctatagccaagcttggcatgattaacatatatgccacagcttgagagggatatagtattaactgatatagctcatcgttggttagt 3451690  T
Q  403 tagttatattagttgtaattctgtttttagttgttaggctgagctcttaagctactccttccttaaatgttccaagtgtgtagcgaatgaatatggaaaa 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3451691 tagttatattagttgtaattctgtttttagttgttaggctgagctcttaagctactccttccttaaatgttccaagtgtgtaacgaatgaatatggaaaa 3451790  T
Q  503 agggtcggtgtacttggaatagccgaaaagattgaaattttccatgaagtaccgacacagacacggcactgataataatttgagaaaacgaattaattga 602  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  3451791 agggtcggtgtacttggaatagccgaaagcattgaaattttccatgaagtaccgacacggacacgacactgataataatttgagaaaacgaattaattga 3451890  T
Q  603 atttaatcacatgtgttggtgtcgtgttggtgtgatggacaccggatacgtcttcaatcacaagtgtcggtgctacagaggaatttttcacaagtgtgta 702  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3451891 atttaatcacatgtgttggtgtcgtgtcggtgtgatggacaccggatacgtcttcaatcacaagtgtcggtgctacagaggaatttttcacaagtgtgta 3451990  T
Q  703 gcagtagaagaaaataaaatactaccaccaactttgaaagagattaccttttctctggtatgatacttcttttgtgaagttcctttgtagtgccaatggt 802  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3451991 gcagtagaagaaaataaaatactaccatcaactttgaaagagattaccttttctctggtatgatacttcttttgtgaagttcctttgtagtgccaatggt 3452090  T
Q  803 caaagtttccaatttataacctattgggaaaggtttttatacctctacattctcactccaattagtcctatactatctatttttgcagcactcccttcag 902  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3452091 caaagtttccaatttataatctattgggaaaggtttttatacctctacattcacactccaattagtcctatactatctatttttgcagcactcccttcag 3452190  T
Q  903 cactactagaaaaattaggagtgaaaagaatattttagatctatgcaatgacactgatgaagaaaagaacacaatgcattctttcgcaaaactttcctag 1002  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  3452191 cactactagaaaaattaggagtcaaaagaatattttagatctatacaatgacactgatgaagagaagaacacgatgcattctttcgcaaaactttcctag 3452290  T
Q  1003 gctcttatttcctttatacacaagtaaaatttacatggctgtcagcttagatacttttcaagacactctttcaattttaggaatgtcactggttttgaca 1102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452291 gctcttatttcctttatacacaagtaaaatttacatggctgtcagcttagatacttttcaagacactctttcaattttaggaatgtcactggttttgaca 3452390  T
Q  1103 caaatgcgtccataccgttggcgaaacattcttcagcactctctgacattgtgtttgctgtcatctgcatttaatatgagatggtataaaaaatgataat 1202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452391 caaatgcgtccataccgttggcgaaacattcttcagcactctctgacattgtgtttgctgtcatctgcatttaatatgagatggtataaaaaatgataat 3452490  T
Q  1203 atactactaaaagattgtgtttattgtaaaaatgtatcctcgcgtgcaattgtggagactaatctctctataacttcctaagttgtctgttactgttgtt 1302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  3452491 atactactaaaagattgtgtttattgtaaaaatgtatcctcgcgtgcaattgtggagactaatctctctataacttcctaagttgtctgttattgttgtt 3452590  T
Q  1303 tgtatatttgtaaagattaatatgtaattgctcaccgcaacaatgtggatgcgctttttaggtggcacagaacattcatccgaagctgataaactttgtt 1402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452591 tgtatatttgtaaagattaatatgtaattgctcaccgcaacaatgtggatgcgctttttaggtggcacagaacattcatccgaagctgataaactttgtt 3452690  T
Q  1403 caactccagcttctcttgcagcatcccaattgcctgtttcctcataagacctgatcagttttgttgtttgaagaccattcataactggcatgtaaacatc 1502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452691 caactccagcttctcttgcagcatcccaattgcctgtttcctcataagacctgatcagttttgttgtttgaagaccattcataactggcatgtaaacatc 3452790  T
Q  1503 ctgtaaagtgaaagtatcaaaacgtaattcataaaatcccataatgtgtgaattataggaaaaaacaacaaaatgaaagatacagttcaggattgaagaa 1602  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3452791 ctgtaaagtgaaagtatcaaaccgtaattcataaaatcccataatgtgtgaattataggaaaaagcaacaaaatgaaagatacagttcaggattgaagaa 3452890  T
Q  1603 attaccatcaaaataatgtcgtaagaatggctctgaactgcgcgtatggcttccactccattattcacgacatccatgctatatcctagctgcttcatca 1702  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452891 attaccatcaaaataatgtcgtaagaatggctctgaactgcgcgtatggcttccactccattattcacgacatccatgctatatcctagctgcttcatca 3452990  T
Q  1703 ttgactttgtcaccatgatattaatcttgttatcttcaacaagaagaatattcggctttaacgtcgatttggttacttctgatgatgt 1790  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3452991 ttgactttgtcaccatgatattaatcttgttatcttcaacaagaagaatattcggctttaacgtcgatttggttacttctgatgatgt 3453078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 569 - 618
Target Start/End: Complemental strand, 26462702 - 26462653
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgt 618  Q
    ||||||||||||||| |||||| ||| ||||||||| |||||||||||||    
T  26462702 cactgataataatttaagaaaatgaaataattgaatgtaatcacatgtgt 26462653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 134
Target Start/End: Original strand, 3451343 - 3451374
Alignment:
Q  103 gtgtatatgcttattattcctgtctcccatat 134  Q
    ||||||||||||||||||||||||||||||||    
T  3451343 gtgtatatgcttattattcctgtctcccatat 3451374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 576 - 626
Target Start/End: Original strand, 3148159 - 3148209
Alignment:
Q  576 aataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcg 626  Q
    |||||||||||||||  |||||||| ||| ||||||||||||| |||||||    
T  3148159 aataatttgagaaaataaattaatttaatataatcacatgtgtcggtgtcg 3148209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 569 - 635
Target Start/End: Original strand, 43328469 - 43328535
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttggtgt 635  Q
    |||| ||||||||||||||||| ||| ||||| ||| ||| |||||||||   ||||||||||||||    
T  43328469 cacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgttggtgt 43328535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 573 - 629
Target Start/End: Complemental strand, 26777431 - 26777374
Alignment:
Q  573 gataataatttgagaaaac-gaattaattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    ||||||||||||| ||||  || |||||||||| ||||||||||||| ||||||||||    
T  26777431 gataataatttgaaaaaaatgacttaattgaatgtaatcacatgtgtgggtgtcgtgt 26777374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 8e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-22
Query Start/End: Original strand, 1418 - 1512
Target Start/End: Complemental strand, 48698072 - 48697978
Alignment:
Q  1418 ttgcagcatcccaattgcctgtttcctcataagacctgatcagttttgttgtttgaagaccattcataactggcatgtaaacatcctgtaaagtg 1512  Q
    ||||||||||||||||||||||||||||  ||||||  || |||||||||| ||||||||||| ||||| ||||||| | |||||||||||||||    
T  48698072 ttgcagcatcccaattgcctgtttcctcgaaagaccgaattagttttgttgcttgaagaccatccataattggcatgcacacatcctgtaaagtg 48697978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 8e-22
Query Start/End: Original strand, 1059 - 1173
Target Start/End: Complemental strand, 48698366 - 48698252
Alignment:
Q  1059 ttcaagacactctttcaattttaggaatgtcactggttttgacacaaatgcgtccataccgttggcgaaacattcttcagcactctctgacattgtgttt 1158  Q
    ||||| |||||||||||||||| | ||  || | |||||||||||||||| ||||||||| || || |||||||||||||||||||||||||  |  |||    
T  48698366 ttcaatacactctttcaattttcgtaaactcgcaggttttgacacaaatgagtccataccattagcaaaacattcttcagcactctctgacaaagcattt 48698267  T
Q  1159 gctgtcatctgcatt 1173  Q
    |||||||||||||||    
T  48698266 gctgtcatctgcatt 48698252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-17
Query Start/End: Original strand, 1658 - 1785
Target Start/End: Complemental strand, 48697809 - 48697682
Alignment:
Q  1658 ctccattattcacgacatccatgctatatcctagctgcttcatcattgactttgtcaccatgatattaatcttgttatcttcaacaagaagaatattcgg 1757  Q
    |||||||||| || ||||| ||| |||  || | ||| |||||||| || | |||||||||||| |||||||||||||||||||||||||| || || ||    
T  48697809 ctccattattgacaacatctatgttatgacccaactgtttcatcatggattgtgtcaccatgatgttaatcttgttatcttcaacaagaaggatcttagg 48697710  T
Q  1758 ctttaacgtcgatttggttacttctgat 1785  Q
    |||| |  | ||||||||||||||||||    
T  48697709 ctttgatatggatttggttacttctgat 48697682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000003
Query Start/End: Original strand, 569 - 632
Target Start/End: Complemental strand, 18268062 - 18267999
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttgg 632  Q
    |||||||||||||||||||||| ||||||||||||  ||||||||||||| ||||| |||||||    
T  18268062 cactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttgtgttgg 18267999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 575 - 629
Target Start/End: Complemental strand, 49636877 - 49636823
Alignment:
Q  575 taataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    |||||||||||||||| ||||||||||||| |||||||||| | |||||||||||    
T  49636877 taataatttgagaaaatgaattaattgaatgtaatcacatgcgctggtgtcgtgt 49636823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 562 - 625
Target Start/End: Complemental strand, 53792016 - 53791953
Alignment:
Q  562 gacacggcactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtc 625  Q
    ||||||||||| ||||||||||||||||| | | ||||||||| ||| ||||||||| ||||||    
T  53792016 gacacggcactaataataatttgagaaaaaggaataattgaatgtaaccacatgtgtcggtgtc 53791953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 569 - 618
Target Start/End: Complemental strand, 19323505 - 19323456
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgt 618  Q
    |||||||| ||||||||||||| ||  |||||||||||||||||||||||    
T  19323505 cactgatagtaatttgagaaaatgacataattgaatttaatcacatgtgt 19323456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 575 - 631
Target Start/End: Original strand, 2988934 - 2988990
Alignment:
Q  575 taataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttg 631  Q
    ||||||||||| ||||  || ||| ||||||||||| ||||||||||||||||||||    
T  2988934 taataatttgacaaaataaaataaatgaatttaatcgcatgtgttggtgtcgtgttg 2988990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 569 - 629
Target Start/End: Original strand, 47542537 - 47542597
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    ||||| |||||||||||||||| ||| || |||||| ||||||||||||| ||||| ||||    
T  47542537 cactggtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtcggtgttgtgt 47542597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 625
Target Start/End: Original strand, 42748405 - 42748455
Alignment:
Q  575 taataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtc 625  Q
    ||||||| |||||||||  | || |||||||||||||||||||||||||||    
T  42748405 taataatctgagaaaacagaatagttgaatttaatcacatgtgttggtgtc 42748455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 13725310 - 13725359
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgt 618  Q
    ||||||| ||||| |||||||| |||||||||||||  ||||||||||||    
T  13725310 cactgatgataatatgagaaaatgaattaattgaatgaaatcacatgtgt 13725359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 577 - 629
Target Start/End: Original strand, 28322251 - 28322303
Alignment:
Q  577 ataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||| ||||    
T  28322251 ataatttgagaaaatgaattaattgaatgtaatcacatgtgttggtgtagtgt 28322303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 585 - 626
Target Start/End: Original strand, 40141299 - 40141340
Alignment:
Q  585 agaaaacgaattaattgaatttaatcacatgtgttggtgtcg 626  Q
    |||||| ||||||||||||||||| |||||||||||||||||    
T  40141299 agaaaatgaattaattgaatttaaccacatgtgttggtgtcg 40141340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 575 - 626
Target Start/End: Original strand, 15086706 - 15086757
Alignment:
Q  575 taataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcg 626  Q
    |||||||||||||||  |||||| |||||  |||||||||||||||||||||    
T  15086706 taataatttgagaaagtgaattatttgaacgtaatcacatgtgttggtgtcg 15086757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 567 - 630
Target Start/End: Complemental strand, 42370207 - 42370145
Alignment:
Q  567 ggcactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgtt 630  Q
    ||||||| ||| ||||||| |||| ||||| ||| ||| |||||||||||||||||||||||||    
T  42370207 ggcactggtaaaaatttga-aaaatgaattgattaaatgtaatcacatgtgttggtgtcgtgtt 42370145  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 596 - 629
Target Start/End: Original strand, 17535650 - 17535683
Alignment:
Q  596 taattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    ||||||||| ||||||||||||||||||||||||    
T  17535650 taattgaatataatcacatgtgttggtgtcgtgt 17535683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 596 - 633
Target Start/End: Complemental strand, 29200829 - 29200792
Alignment:
Q  596 taattgaatttaatcacatgtgttggtgtcgtgttggt 633  Q
    ||||||||| |||||||||||||||||||||| |||||    
T  29200829 taattgaatgtaatcacatgtgttggtgtcgttttggt 29200792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.0000000000002
Query Start/End: Original strand, 575 - 619
Target Start/End: Original strand, 2796554 - 2796598
Alignment:
Q  575 taataatttgagaaaacgaattaattgaatttaatcacatgtgtt 619  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  2796554 taataatttgagaaaatgaattaattgaatttaatcacatgtgtt 2796598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000003
Query Start/End: Original strand, 579 - 624
Target Start/End: Complemental strand, 1386578 - 1386533
Alignment:
Q  579 aatttgagaaaacgaattaattgaatttaatcacatgtgttggtgt 624  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||    
T  1386578 aatttgagaaaagtaattaattgaatataatcacatgtgttggtgt 1386533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 573 - 625
Target Start/End: Original strand, 20119951 - 20120003
Alignment:
Q  573 gataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtc 625  Q
    |||||||||||||||||| ||| ||||| ||| |||||||||||||| |||||    
T  20119951 gataataatttgagaaaatgaaataatttaatgtaatcacatgtgttagtgtc 20120003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.00000001
Query Start/End: Original strand, 573 - 625
Target Start/End: Complemental strand, 31277077 - 31277025
Alignment:
Q  573 gataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtc 625  Q
    |||||||||||||||||| ||| ||||||||| ||||||||| | ||||||||    
T  31277077 gataataatttgagaaaatgaactaattgaatgtaatcacatattttggtgtc 31277025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 611
Target Start/End: Complemental strand, 32369965 - 32369927
Alignment:
Q  573 gataataatttgagaaaacgaattaattgaatttaatca 611  Q
    |||||||||||||||||| ||||||||||||| ||||||    
T  32369965 gataataatttgagaaaatgaattaattgaatgtaatca 32369927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 579 - 677
Target Start/End: Original strand, 4012732 - 4012829
Alignment:
Q  579 aatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttggtgtgatggacaccggatacgtcttcaatcacaagtgtcggtgcta 677  Q
    ||||||| |||| ||||||||||||| |||||||||||||| ||||||| ||  |||| |||||||| || |||||||  |||  ||||||||||||||    
T  4012732 aatttgaaaaaatgaattaattgaatataatcacatgtgtttgtgtcgt-ttcatgtgttggacaccagacacgtctttcatcggaagtgtcggtgcta 4012829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000003
Query Start/End: Original strand, 569 - 623
Target Start/End: Complemental strand, 6294593 - 6294539
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtg 623  Q
    |||||||||||||||||||||| |||||||||||||  |||| ||||||||||||    
T  6294593 cactgataataatttgagaaaatgaattaattgaatgcaatcgcatgtgttggtg 6294539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 569 - 683
Target Start/End: Complemental strand, 10760898 - 10760787
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttggtgtgatggacaccggatacgtcttcaatcacaagtg 668  Q
    |||||||||||||||||||||| ||  || |||||| |||||||| |||| | ||||||||||||||   |||| ||||| ||  |||| |||| | |||    
T  10760898 cactgataataatttgagaaaatgacata-ttgaatgtaatcacacgtgtcgatgtcgtgttggtgt--cggacgccggacaccccttccatcagatgtg 10760802  T
Q  669 tcggtgctacagagg 683  Q
    |||||||||||||||    
T  10760801 tcggtgctacagagg 10760787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 575 - 629
Target Start/End: Complemental strand, 6284712 - 6284658
Alignment:
Q  575 taataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    |||||||||||||||| ||  |||||||||||||||||||||||| |||| ||||    
T  6284712 taataatttgagaaaatgacataattgaatttaatcacatgtgttagtgtagtgt 6284658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 573 - 619
Target Start/End: Original strand, 34625740 - 34625786
Alignment:
Q  573 gataataatttgagaaaacgaattaattgaatttaatcacatgtgtt 619  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||    
T  34625740 gataataatttgagaaaatgaattaattgaatgtaatcacatatgtt 34625786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 577 - 624
Target Start/End: Original strand, 6074523 - 6074570
Alignment:
Q  577 ataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgt 624  Q
    |||||||||||||| |||||| |||||  |||||||||||||||||||    
T  6074523 ataatttgagaaaatgaattagttgaacgtaatcacatgtgttggtgt 6074570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 569 - 620
Target Start/End: Original strand, 8923278 - 8923329
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttg 620  Q
    ||||| ||||||||||||||||||| ||| |||||| ||||||| |||||||    
T  8923278 cactggtaataatttgagaaaacgagttatttgaatgtaatcacgtgtgttg 8923329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 580 - 618
Target Start/End: Complemental strand, 32577510 - 32577472
Alignment:
Q  580 atttgagaaaacgaattaattgaatttaatcacatgtgt 618  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  32577510 atttgagaaaatgaattaattgaatgtaatcacatgtgt 32577472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 573 - 619
Target Start/End: Original strand, 34598544 - 34598590
Alignment:
Q  573 gataataatttgagaaaacgaattaattgaatttaatcacatgtgtt 619  Q
    |||||||||||||||||| |||||||||| || ||||||||| ||||    
T  34598544 gataataatttgagaaaatgaattaattggatgtaatcacatatgtt 34598590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 592 - 625
Target Start/End: Original strand, 24821698 - 24821731
Alignment:
Q  592 gaattaattgaatttaatcacatgtgttggtgtc 625  Q
    ||||||||||||| ||||||||||||||||||||    
T  24821698 gaattaattgaatgtaatcacatgtgttggtgtc 24821731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.00000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 569 - 626
Target Start/End: Complemental strand, 46179967 - 46179910
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcg 626  Q
    |||||||||||| |||||||||  |||||||||||| ||||||||||||| |||||||    
T  46179967 cactgataataagttgagaaaataaattaattgaatataatcacatgtgtcggtgtcg 46179910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 572 - 635
Target Start/End: Complemental strand, 44172944 - 44172881
Alignment:
Q  572 tgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttggtgt 635  Q
    ||||||||||||||||||| ||  ||||| ||| |||||||||||||| |||| ||||||||||    
T  44172944 tgataataatttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt 44172881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 578 - 624
Target Start/End: Original strand, 31837762 - 31837808
Alignment:
Q  578 taatttgagaaaacgaattaattgaatttaatcacatgtgttggtgt 624  Q
    ||||||||||||| ||| ||||||||| ||||| |||||||||||||    
T  31837762 taatttgagaaaatgaaataattgaatgtaatctcatgtgttggtgt 31837808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 570 - 631
Target Start/End: Complemental strand, 7139497 - 7139436
Alignment:
Q  570 actgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttg 631  Q
    |||| ||||| |||||||||| |||||||||||||  | | |||||||| ||||||||||||    
T  7139497 actggtaatattttgagaaaatgaattaattgaatgcagtaacatgtgtaggtgtcgtgttg 7139436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 582 - 635
Target Start/End: Original strand, 22636456 - 22636509
Alignment:
Q  582 ttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttggtgt 635  Q
    |||| ||||| || ||||||||| |||||| ||||||||||||||||| |||||    
T  22636456 ttgataaaacaaaataattgaatgtaatcaaatgtgttggtgtcgtgtcggtgt 22636509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 569 - 618
Target Start/End: Original strand, 23948394 - 23948443
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgt 618  Q
    ||||||||||||||||| ||||  |||||||||||| |||||| ||||||    
T  23948394 cactgataataatttgaaaaaatcaattaattgaatgtaatcatatgtgt 23948443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 574 - 635
Target Start/End: Original strand, 30013202 - 30013263
Alignment:
Q  574 ataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttggtgt 635  Q
    |||||||| |||||||| ||  ||||| ||| |||||||||||||| ||||| |||||||||    
T  30013202 ataataatatgagaaaatgacgtaattcaatataatcacatgtgtttgtgtcatgttggtgt 30013263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 568 - 629
Target Start/End: Complemental strand, 31808567 - 31808506
Alignment:
Q  568 gcactgataataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    |||| |||||||||||||||||| ||   || | ||| ||||||||||||||||||||||||    
T  31808567 gcaccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgt 31808506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 569 - 629
Target Start/End: Complemental strand, 34399954 - 34399893
Alignment:
Q  569 cactgataataatttgagaaaacg-aattaattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    |||||||||||||||||||||| | || | ||||||| |||||| |||||| ||||||||||    
T  34399954 cactgataataatttgagaaaatgtaaatgattgaatgtaatcatatgtgtgggtgtcgtgt 34399893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000007
Query Start/End: Original strand, 577 - 631
Target Start/End: Complemental strand, 35198280 - 35198226
Alignment:
Q  577 ataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgttg 631  Q
    ||||||| |||||| ||||||||||||| ||||||||||||  ||||||||||||    
T  35198280 ataatttaagaaaatgaattaattgaatgtaatcacatgtgacggtgtcgtgttg 35198226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 577 - 618
Target Start/End: Complemental strand, 8765450 - 8765409
Alignment:
Q  577 ataatttgagaaaacgaattaattgaatttaatcacatgtgt 618  Q
    ||||||| |||||||||||||||||||| ||| |||||||||    
T  8765450 ataatttaagaaaacgaattaattgaatgtaagcacatgtgt 8765409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000007
Query Start/End: Original strand, 569 - 618
Target Start/End: Complemental strand, 28369862 - 28369813
Alignment:
Q  569 cactgataataatttgagaaaacgaattaattgaatttaatcacatgtgt 618  Q
    |||||||||||||||||||||| ||||||| | ||| |||| ||||||||    
T  28369862 cactgataataatttgagaaaatgaattaaataaatgtaataacatgtgt 28369813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.0000002
Query Start/End: Original strand, 575 - 629
Target Start/End: Original strand, 3066050 - 3066104
Alignment:
Q  575 taataatttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgt 629  Q
    |||||||||||||||| | ||||||||||| |||| |||||||| ||| ||||||    
T  3066050 taataatttgagaaaatggattaattgaatgtaataacatgtgtcggtatcgtgt 3066104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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