View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18137_low_11 (Length: 238)
Name: NF18137_low_11
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18137_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5573345 - 5573404
Alignment:
| Q |
1 |
gctgcaatcaaaaggacttcagtttgagcttaactaaaaagagggattaaatttcataat |
60 |
Q |
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| T |
5573345 |
gctgcaatcaaaaggacttgagtttgagcttaattaaaaagagagattaaatttgataat |
5573404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 5587107 - 5587169
Alignment:
| Q |
68 |
taaatacacaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaaga |
130 |
Q |
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| T |
5587107 |
taaatagacaaggcacttgggatttcccattgacacattgttgcaaatagtttgcagaaaaga |
5587169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 5573576 - 5573638
Alignment:
| Q |
68 |
taaatacacaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaaga |
130 |
Q |
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| T |
5573576 |
taaatacacaaggcacttgagatttcccattgacacattgtttaaaatagtttgcagacaaga |
5573638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 5582858 - 5582915
Alignment:
| Q |
75 |
acaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaagaga |
132 |
Q |
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| T |
5582858 |
acaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagaga |
5582915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 5593350 - 5593407
Alignment:
| Q |
75 |
acaaggcacctgggatttcccattgacacattgttgcaaataatttccagacaagaga |
132 |
Q |
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|||||| || |||||||||||||||||| |||| |||||||| ||| ||||||||||| |
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| T |
5593350 |
acaaggaacttgggatttcccattgacagattgctgcaaatagtttgcagacaagaga |
5593407 |
T |
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