View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18137_low_2 (Length: 525)
Name: NF18137_low_2
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18137_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 506; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 1 - 518
Target Start/End: Original strand, 7902200 - 7902717
Alignment:
| Q |
1 |
aattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatacaaaatatttaattatattta |
100 |
Q |
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| T |
7902200 |
aattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaatacaatttgtacaaatacaaaatatttaattatagtta |
7902299 |
T |
|
| Q |
101 |
caagagaataaaatctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgaga |
200 |
Q |
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| T |
7902300 |
caagagaataaattctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgaga |
7902399 |
T |
|
| Q |
201 |
atcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgatgctgtttatacaaaaccattcacca |
300 |
Q |
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| T |
7902400 |
atcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtggaggttgatgctgtttatacaaaaccattcacca |
7902499 |
T |
|
| Q |
301 |
ctcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgccaatcaagttgctggtaggtactttgtggccaccaaggcttttatgga |
400 |
Q |
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| T |
7902500 |
ctcaggctatactaattgctcctggtcaaaccacaaacgttctggttcatgccaatcaagttgctggtaggtactttgtggccaccaaggcttttatgga |
7902599 |
T |
|
| Q |
401 |
tgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaagacatcccaaacactgtccaacccatccttccacagttgccagctagc |
500 |
Q |
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| T |
7902600 |
tgccccaattcaagttgacaacaaaactgctacagctatacttcaatacaaagacatcccaaacactgtccaacccatccttccacagttgccagctagc |
7902699 |
T |
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| Q |
501 |
aatgacacaggttctgct |
518 |
Q |
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| T |
7902700 |
aatgacacaggttttgct |
7902717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 146 - 343
Target Start/End: Original strand, 7892072 - 7892269
Alignment:
| Q |
146 |
ttttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcg |
245 |
Q |
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||||||||| |||| |||||||||||| || | || |||||||| || | |||||| |||| || ||||| || ||||||||||||||| || |||| |
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| T |
7892072 |
ttttctagatacatatgcaatggaggttgagaagggcaagacatatctgctaagaatcatcaatgcagcccttaatgatgagcttttcttttcccttgct |
7892171 |
T |
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| Q |
246 |
ggtcacaacatgacagtagtggaggttgatgctgtttatacaaaaccattcaccactcaggctatactaattgctcctggtcaaaccacaaacgttct |
343 |
Q |
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| T |
7892172 |
ggtcacaacatgacagtagttgaagttgatgcagtttacacaaaaccattcacaacacaatccattctaattggtcctggtcaaaccacaaatgttct |
7892269 |
T |
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