View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18137_low_3 (Length: 459)
Name: NF18137_low_3
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18137_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 237 - 438
Target Start/End: Complemental strand, 26836134 - 26835933
Alignment:
| Q |
237 |
tactgaaaataagctagttcttgtaatcttgagtgttatcgaattctgcacacaatgattgaaacctcagtttgctgtttgtactgatatagagaatatt |
336 |
Q |
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| T |
26836134 |
tactgaaaataagctagttcttgtaatcttgagtgttatcgaattctgcacacaatgattgaaacctcagtttgctgtttgtactgatatagagaatatt |
26836035 |
T |
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| Q |
337 |
tacggttaggtattttctccctggggcctgtctctcaagttctttgatgcttggatcattcaacatttgtcctagaacaattccaatttttccctttccc |
436 |
Q |
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| T |
26836034 |
tacggttaggtattttctccctggggcctctctctcaagttttttgatgcttggatcattcaatatttgtcctagaacaattccaatttttccctttccc |
26835935 |
T |
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| Q |
437 |
cc |
438 |
Q |
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|| |
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| T |
26835934 |
cc |
26835933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 26836337 - 26836211
Alignment:
| Q |
19 |
gtgttgatactaatgatgaacgccttgagtcctttcatttattgtttcccgtcatggtaattggtaaatgatgaaagcaccaatgtgaagataagaaatt |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26836337 |
gtgttgataccaatgatgaacgccttgagtcctttcatttattgtttcccgtcatggtaattggtaaatgatgaaagcaccaatgtaaagataagaaatt |
26836238 |
T |
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| Q |
119 |
aaacaaaagcaaatgtggaaatctcaa |
145 |
Q |
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| T |
26836237 |
atacaaaagcaaatgtggaaatctcaa |
26836211 |
T |
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