View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18137_low_4 (Length: 423)
Name: NF18137_low_4
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18137_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 13 - 407
Target Start/End: Original strand, 55736368 - 55736762
Alignment:
| Q |
13 |
aaggttgaacaagctaacnnnnnnnagactaaaaactactatcaggcaagaaaacacaattttcttacaactcaatttaatccaacaaaaataatacctc |
112 |
Q |
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| T |
55736368 |
aaggttgaacaagctaactttttttagactaaaaactactatcaggcaagaaaacacaattttcttacaactcaatttaatccaacaaaaataatacctc |
55736467 |
T |
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| Q |
113 |
gaattatctttgacatttttgtacaagaacaacgtagcgaatagacttattgatcacttgttttgtacatattagagactaatttaagtattattttttg |
212 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55736468 |
gaattatctttgacatttttgtaaaagaacaacgtagcgaatagacttattgatcacttgttttgtacatattagagactaatttaagtattattttttg |
55736567 |
T |
|
| Q |
213 |
tccagaccaatccttgaaaattacatatgaatgagaatgaccaaattttgtttttggtctccnnnnnnnatccattgatcttggatgggtatacatgatt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
55736568 |
tccagaccaatccttgaaaattacatatgaatgagaatgaccaaattgagtttttggtctcctttttttatccattgatcttggatgggtatacatgatt |
55736667 |
T |
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| Q |
313 |
atatatttttgaatgattagaatgacagagtttatttatgagtttaatagtggtgggttgatagattgtgtgtacaaaactgttttggacagtga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
55736668 |
atatatttttgaatgattagaatgacagagtttatttatgagtttaatagtggtgggttgatcgattgtgtgtacaaaactgttttggaccgtga |
55736762 |
T |
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