View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18137_low_5 (Length: 423)
Name: NF18137_low_5
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18137_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 77 - 407
Target Start/End: Complemental strand, 13738566 - 13738236
Alignment:
| Q |
77 |
taaatgtcagaagcatcattaaccacttggagtatttcgataaccactaaagtacagtccttagaaacttagtgcgctttcttaacaattaaaaagatgt |
176 |
Q |
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| T |
13738566 |
taaatgtcagaagcatcattaaccacttagagtatttcgataaccactaaagtacagtccttagaaacttagtgtgctttcttaaccattaaaaagatgt |
13738467 |
T |
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| Q |
177 |
attctaaatattcaatgtcttgcattttagttgttaatgaaatacttgttaattatgagatatttctatactacgttcatttcataactatgttaatgaa |
276 |
Q |
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| T |
13738466 |
attctaaatattcaatgtcttgcattttagttgttaatgaaatacttgttaattatgagatatttctatactacgttcatttcataactatgttaatgaa |
13738367 |
T |
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| Q |
277 |
atattggctaatggtatattttttattattatagagaaggccgattgatgtacttttaatggttaacaaaatatataataaataagtggttggttaatca |
376 |
Q |
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| T |
13738366 |
atattggctaatggtatattttttattattatagagaaggccgattgatgtacttttaatggttaacaaaacatataataaataagtggttggttaatca |
13738267 |
T |
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| Q |
377 |
cattcattttaatgcttaatgaagtactaac |
407 |
Q |
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| T |
13738266 |
cattcattttaatgcttaatgaagtactaac |
13738236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 13739408 - 13739350
Alignment:
| Q |
21 |
agtatttcattaaccattaaaatataagtaattaacttcatatttaaaatatttattaa |
79 |
Q |
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| T |
13739408 |
agtatttcattaaccattaaaatattagtaattaacttcatatttaaaatatttattaa |
13739350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 79
Target Start/End: Complemental strand, 13744908 - 13744850
Alignment:
| Q |
21 |
agtatttcattaaccattaaaatataagtaattaacttcatatttaaaatatttattaa |
79 |
Q |
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| T |
13744908 |
agtatttcattaaccattaaaatattagtaattaacttcatatttaaaatatttattaa |
13744850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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