View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18137_low_9 (Length: 268)
Name: NF18137_low_9
Description: NF18137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18137_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 258
Target Start/End: Complemental strand, 53278534 - 53278293
Alignment:
| Q |
17 |
agttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataataaa |
116 |
Q |
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| T |
53278534 |
agttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataataaa |
53278435 |
T |
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| Q |
117 |
catcaaggtaaaccatccttgtattgggcaagttccggttaagagaagacaactcctttgataatttagtgttgaataacttgcatgcgtcgttgatttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53278434 |
catcaaggtaaaccatccttgtattgggcaagttccggttaagagaagacaactcctttgataatttagtgttgaataacttgcatgcgtcgttgatttt |
53278335 |
T |
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| Q |
217 |
ttctgcacattttctctcaattcctccaacaaccgttctctg |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
53278334 |
ttctgcacattttctctcaattcctccaacaaccgttctctg |
53278293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 17 - 194
Target Start/End: Original strand, 11836117 - 11836294
Alignment:
| Q |
17 |
agttttcaatccaactatgaattggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataataaa |
116 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11836117 |
agttttcaatccagctatgaactggtaataaaaagaagtgtcggattatacataccataattttggtaatttagaatgatgtcaagaagaggataataaa |
11836216 |
T |
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| Q |
117 |
catcaaggtaaaccatccttgtattgggcaagttccggttaagagaagacaactcctttgataatttagtgttgaata |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
11836217 |
catcaaggtaaaccatccttgtattgggcaagttccggttaagagaagccaactcctttcataatttagtgttgaata |
11836294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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