View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_high_10 (Length: 363)
Name: NF18138_high_10
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 2655198 - 2654860
Alignment:
| Q |
9 |
agcacagatggtagtttcttgtagtttatgttctgaattagaagatggagtaattggaaactatatggttacagaatttgtgttgtatgattttactcat |
108 |
Q |
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| T |
2655198 |
agcacagatgctagtttcttgtagtttatgttctgaattagaagatggagtaattggaaactatatggttacagaatttgtgttgtatgattttactcat |
2655099 |
T |
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| Q |
109 |
tcaagaaaaagtattataccaaagaaaaagtcttacagcaaacaagatgcttcgaaaactctgaatgcttctagccttgaaagtgctactattgttttgc |
208 |
Q |
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| T |
2655098 |
tcaagaaaaagtgttataccaaagaaaaagtcttacagcaaacaagatgcttcgaaaactctgaatgcttctagccttgaaagtgctgctattgttttgc |
2654999 |
T |
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| Q |
209 |
gaataccttttcataagagagaaagcttgaaatacaaaagaggtgatagaatgaaaactaaagcacattccaaacaaagtgacgtctcttcaccagtaga |
308 |
Q |
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| T |
2654998 |
gaataccttttcataagagagaaagcttgaaatacaaaagaggtgatagaatgaaaactaaagcacattccaaacaaagtgatgtctcttcaccagtaga |
2654899 |
T |
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| Q |
309 |
gcaagtgaaggtggtactaccaattggaaaccatggttt |
347 |
Q |
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| T |
2654898 |
gcaagtgaaggtggtactaccaattggaaaccatggttt |
2654860 |
T |
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