View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_high_13 (Length: 285)
Name: NF18138_high_13
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 3639163 - 3638906
Alignment:
| Q |
18 |
taataaatttaaaaagtcaaacgcgaaaattnnnnnnntttataagtggaaagttaacaacataataaacacacatgaagggaaaattcaaagataactg |
117 |
Q |
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| T |
3639163 |
taataaattaaaaaagtcaaacgcgaaagttaaaaaaatttataagtggaaagttaacaacataataaacacacatgaagggaaaattcaaagataactg |
3639064 |
T |
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| Q |
118 |
ctgaaaaagagagaggacgaagaaaaagatcttaccttaatgatacatgcaaatttggtgcagaaactatgcttcccgtgaagcataatgcctactcttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3639063 |
ctgaaaaagagagaggacgaagaaaaagatcttaccttaatgatacatgcaaatttggtgcagaaactatgcttcccgtgaagcataatgcctactcttt |
3638964 |
T |
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| Q |
218 |
caaaaatatgtttttggtttctgcgatgaactgccttcccagatctggtccacttcat |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3638963 |
caaaaatatgtttttggtttctgcgatgaactgccttcccagatctggtccacttcat |
3638906 |
T |
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