View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_high_15 (Length: 254)
Name: NF18138_high_15
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37032474 - 37032240
Alignment:
| Q |
1 |
cttgctgcacatttaagtaacaaatttaagcatcgtttcctttatcataaaaattattaattcnnnnnnnnnnnnnnccagttatattgaccctacatgg |
100 |
Q |
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| T |
37032474 |
cttgctgcacatttaagtaacaaatttaagcatcgtttcctttatcataaaaattattaatt--tttttttttttttccagttatattgacc-tacatgg |
37032378 |
T |
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| Q |
101 |
aatctagaaaaaatttaagctttgaatttaaaagctgtagaattgaagtttaaagctttggaccacatatatacatgttatagtctggtttgtaccatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37032377 |
aatctagaaaaaatttaagctttgaatttaaaagctgtagaattgaagtttaaagctttggaccacatatatacatgttatagtctggtttgtaccatct |
37032278 |
T |
|
| Q |
201 |
tggtctaacataatgttagaagaacaatgctatgtagt |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
37032277 |
tggtctaacataatgttagaagaacaatgctatgtagt |
37032240 |
T |
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