View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_high_16 (Length: 253)
Name: NF18138_high_16
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 123 - 242
Target Start/End: Original strand, 53941138 - 53941257
Alignment:
| Q |
123 |
catgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatggtatgacatttagtttgctcatggcaagtcttgttttgatggaaatg |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53941138 |
catgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatgctatgacatttagtttgctcatggcaagtcttgttttgatggaaatg |
53941237 |
T |
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| Q |
223 |
cctgcaaaggatattattcg |
242 |
Q |
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||||| ||||||||| |||| |
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| T |
53941238 |
cctgcgaaggatattgttcg |
53941257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 53940856 - 53940958
Alignment:
| Q |
1 |
cttatgaagatttggatcatgttttcaaagattgcacttggacnnnnnnnnggtgtagcttcactctcatttgggtattcggtttgaggatccttccctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
53940856 |
cttatgaagatttggatcatgttttcaaagattgcacttggacaaaaaaaaggtgtagcgtccctctcatttgggtattcggtttgaggatccttccctt |
53940955 |
T |
|
| Q |
101 |
ctt |
103 |
Q |
| |
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||| |
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| T |
53940956 |
ctt |
53940958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 24200145 - 24200031
Alignment:
| Q |
60 |
ttcactctcatttgggtattcggtttgaggatccttcccttcttctttataccttggcttgaacatgtcatatcttaatcatccttagatatcatctcgt |
159 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||| | || ||| ||| |||| |||||||||| ||| ||||| |||||| ||||||| | |
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| T |
24200145 |
ttcactcttctttgggggttcgatttgaggatccttcccttcct-ttcatatcttagcttaaacatgtcatttctcgttcatcattagatgtcatctcat |
24200047 |
T |
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| Q |
160 |
atgttctttctttatg |
175 |
Q |
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|||||||||||||||| |
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| T |
24200046 |
atgttctttctttatg |
24200031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 5554230 - 5554361
Alignment:
| Q |
63 |
actctcatttgggtattcggtttgaggatccttcccttcttctttataccttggcttgaacatgtcatatcttaatcatccttagatatcatctcgtatg |
162 |
Q |
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|||||| ||| ||| |||| || |||||| ||||||| || || ||| |||||||||||||||| || | | | ||||| |||||| || |||| |||| |
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| T |
5554230 |
actctcctttaggtgttcgattagaggattcttccct-ctctttcatatcttggcttgaacatgttatttgtcattcatcattagatgtcgtctcatatg |
5554328 |
T |
|
| Q |
163 |
ttctttctttatggtatgacatttagtttgctc |
195 |
Q |
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||||||||||||| |||| |||| |||||||| |
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| T |
5554329 |
ttctttctttatgttatggtatttggtttgctc |
5554361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 212
Target Start/End: Original strand, 21112728 - 21112828
Alignment:
| Q |
112 |
cttggcttgaacatgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatggtatgacatttagtttgctcatggcaagtcttgttt |
211 |
Q |
| |
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|||| |||||| | ||||| ||| | ||||| ||||||||||||| ||| ||||||||||||| |||| |||| |||||||||| ||||||||||| |
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| T |
21112728 |
cttgacttgaataggtcatttctcattcatcattagatatcatctgatatattctttctttatgttatggtatttggtttgctcataataagtcttgttt |
21112827 |
T |
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| Q |
212 |
t |
212 |
Q |
| |
|
| |
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|
| T |
21112828 |
t |
21112828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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