View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18138_high_2 (Length: 617)
Name: NF18138_high_2
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 21 - 276
Target Start/End: Original strand, 50325920 - 50326180
Alignment:
| Q |
21 |
acatgtgtttacgttcaataacttattttctttaattattgcgtataagaattatctagaaggattgtggaaatgat----ccttcaaatttttcgaaaa |
116 |
Q |
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| T |
50325920 |
acatgtgtttacgttcaataacttattttctttaattattgcgtataagaattatctagaaggattgtggaaatgatatatccttcaaatttttcgaaaa |
50326019 |
T |
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| Q |
117 |
atgcagggttggctgcaggactatattcaggactcacatatgggatgaaggaagctcgtggtactcatgactgggtaatgttctaaataactagatttat |
216 |
Q |
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| T |
50326020 |
atgcagggttggctgcaggactatattcaggactcacatatgggatgaaggaagctcgtggtactcatgactgggtaatgttctaaataactagatttat |
50326119 |
T |
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| Q |
217 |
gataca-ttttttgtaaaaggaacaagggcaagcctctcttcatcactggtgtgaataata |
276 |
Q |
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| T |
50326120 |
gatacatttttttgtaaaaggaacaagggcaagcctctcttcatcactggtgtgaataata |
50326180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 317 - 549
Target Start/End: Original strand, 50326187 - 50326419
Alignment:
| Q |
317 |
tattacatgtgcttgagtaattatttattctgttgcagaaaaatagtgcagttgctggagcaatcactggtgcagcacttgcatgtacatcagataacac |
416 |
Q |
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| T |
50326187 |
tattacatgtgcttgagtaattatttattctgttgcagaaaaatagtgcagttgctggagcaatcactggagcagcacttgcatgtacatcagataacac |
50326286 |
T |
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| Q |
417 |
ttctcatgaacagattgcgcaatgtgctattaccggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaacctgttgggatttttag |
516 |
Q |
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| T |
50326287 |
atctcatgaacagattgcgcaatgtgctattaccggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaacctgttgggatttttag |
50326386 |
T |
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| Q |
517 |
ccttgtttttaatcttccaatttgtgacattta |
549 |
Q |
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| T |
50326387 |
ccttgtttttaatcttccaatttgtgacattta |
50326419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 544 - 600
Target Start/End: Original strand, 50326457 - 50326513
Alignment:
| Q |
544 |
catttagcaactatttctttctgaatttgtagttctctttttcaaatgtgttgtctc |
600 |
Q |
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| T |
50326457 |
catttagcaactatttctttctgaatttgtagttctctttttcaaatgtgttgtctc |
50326513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 350 - 499
Target Start/End: Complemental strand, 13202440 - 13202291
Alignment:
| Q |
350 |
tgcagaaaaatagtgcagttgctggagcaatcactggtgcagcacttgcatgtacatcagataacacttctcatgaacagattgcgcaatgtgctattac |
449 |
Q |
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| T |
13202440 |
tgcagaaaaacagtgcagttgctggagcaatcaccggggctacccttgcacttacattggaagactccacacatgaacatgttgttcaatgtgctatcac |
13202341 |
T |
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| Q |
450 |
cggagctgcgatttcaactgctgcaaatcttctaacagggatattctaaa |
499 |
Q |
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| T |
13202340 |
tggagctgcaatctcaactgttgcaaatcttctcaaagggattttctaaa |
13202291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 13202711 - 13202643
Alignment:
| Q |
126 |
tggctgcaggactatattcaggactcacatatgggatgaaggaagctcgtggtactcatgactgggtaa |
194 |
Q |
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| T |
13202711 |
tggctgcaggaatatactccggcctaacatatgggctgaaggaagctcgaggagctcatgactgggtaa |
13202643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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