View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18138_high_22 (Length: 239)
Name: NF18138_high_22
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 17693771 - 17693552
Alignment:
| Q |
3 |
atcagaatcataacaaagatttcattgatatttgacaccatttgtttcattatgtcaacattacaaatgtcacaactcacaacaacttgaacttcatata |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17693771 |
atcagaatcataacaaagatttcattgatatttgataccatatgtttcattatgtcaacattacaaatgtcacaactcacaacaacttgaacttcatata |
17693672 |
T |
|
| Q |
103 |
aattcatggcagtaaaaagttgtttgctgttatgttggaacttgaagacaaggcataacacaagtggttnnnnnnnncaagagaattgaggaaaaagggt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
17693671 |
aattcatggcagtaaaaagttgtttgctgttatgttggaacttgaagacaaggcataacaaaagtggttaaaaaaaacaagagaattgaggaaaaagggt |
17693572 |
T |
|
| Q |
203 |
ctgaagttgccacaagtgat |
222 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17693571 |
ctgaagttgccacaagtgat |
17693552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 17614053 - 17613914
Alignment:
| Q |
3 |
atcagaatcataacaaagatttcattgatatttgacaccatttgtttcattatgtcaacattacaaatgtcacaactcacaacaacttgaacttcatata |
102 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
17614053 |
atcagaatcataacaaagtttccattgatatttgatatcatttttttcattatgtcaacattacaaatgtcacaagtcacaacaacttgaacttcatcta |
17613954 |
T |
|
| Q |
103 |
aattcatggcagtaaaaagttgtttgctgttatgttggaa |
142 |
Q |
| |
|
|||| || ||||||||||||| |||||| ||||| ||||| |
|
|
| T |
17613953 |
aattgatagcagtaaaaagttatttgctattatgatggaa |
17613914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 3 - 142
Target Start/End: Complemental strand, 17671656 - 17671517
Alignment:
| Q |
3 |
atcagaatcataacaaagatttcattgatatttgacaccatttgtttcattatgtcaacattacaaatgtcacaactcacaacaacttgaacttcatata |
102 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| | ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
17671656 |
atcagaatcataacaaagtttccattgatatttgatatcatttttttcattatgtcaacattacaaatgtcacaagtcacaacaacttgaacttcatcta |
17671557 |
T |
|
| Q |
103 |
aattcatggcagtaaaaagttgtttgctgttatgttggaa |
142 |
Q |
| |
|
|||| || ||||||||||||| |||||| ||||| ||||| |
|
|
| T |
17671556 |
aattgatagcagtaaaaagttatttgctattatgatggaa |
17671517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 17613861 - 17613820
Alignment:
| Q |
182 |
agagaattgaggaaaaa-gggtctgaagttgccacaagtgat |
222 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
17613861 |
agagaattgaggaaaaaagggtcagaagttgccacaagtgat |
17613820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 17657913 - 17657872
Alignment:
| Q |
182 |
agagaattgaggaaaa-agggtctgaagttgccacaagtgat |
222 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
17657913 |
agagaattgaggaaaatagggtcagaagttgccacaagtgat |
17657872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 17671421 - 17671380
Alignment:
| Q |
182 |
agagaattgaggaaaaa-gggtctgaagttgccacaagtgat |
222 |
Q |
| |
|
||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
17671421 |
agagaattgaggaaaaaagggtcagaagttgccacaagtgat |
17671380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University