View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18138_high_26 (Length: 237)
Name: NF18138_high_26
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23887293 - 23887073
Alignment:
| Q |
1 |
tctttctcattttcaaccctcgcaggcgaaagatccacgtcaacggtaggcgcttccatgcttgataaaacctaccaacaaatttttacaaataaaaaca |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23887293 |
tctttctcattttcaatcctcgcaggcgaaagatccacgtcaacggtaggcgcttccatgcttgataaaacctaccaataaatttttacaaataaaaaca |
23887194 |
T |
|
| Q |
101 |
tccttataaacacgcgtatcagctcagtccctcgttttatcaataatcaatgatggtcacttatcaaattgatacaatttaggtttccaaatcaaattga |
200 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
23887193 |
tcgttataaacacgc-tatcagctcagtccctcattttatcaataatcaatgatggtcacttatcaaattgatacaatttaggattccaaatcaaattga |
23887095 |
T |
|
| Q |
201 |
aacaatctgttttgttcattat |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
23887094 |
aacaatctgttttgttcattat |
23887073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University