View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18138_high_4 (Length: 559)
Name: NF18138_high_4
Description: NF18138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18138_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 16 - 545
Target Start/End: Original strand, 35045141 - 35045671
Alignment:
| Q |
16 |
caaaggtctagacataaatggttaatgcattttaattaaggctattgttcggaaagtattagtttgatctctaagttaaataatatgtaattaggtttat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35045141 |
caaaggtctagacataaatggttaatgcattttaattaaggctattgtttggaaagtattagtttgatctctaagttaaataatatgtaattaggtttat |
35045240 |
T |
|
| Q |
116 |
ctttcnnnnnnntat--ttaattaggtttaaattatgtctcaaccaaattttgagttaattagcaaggtattttcattaggaacaatagcatgaaaaaat |
213 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35045241 |
ctttcaaaaaaatatatttaattaggtttaaattatgtctcaaccaaattttgagttaattagcaaggtattttcattaggaacaatagcatgaaaaaat |
35045340 |
T |
|
| Q |
214 |
gttttgctaacaaatgtcgcaagtgcaaatgtttttcccttaaaaaggaaatgttttaaacttttaaagagttaaatagacaacttccataattgtattt |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
35045341 |
gttttgttaacaaatgtcgcaagtgcaaatgttttttccttaaaatggaaatgttttaaacttttaaaaagttaaatagaccacttccataattgtattt |
35045440 |
T |
|
| Q |
314 |
ttaccttcaattcattaacatatgctcttgagatatttataagca-nnnnnnnccttnnnnnnnnncatttagatgatgaatttatgggaattaatgttg |
412 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
35045441 |
ctaccttcgattcattaacatatgctcttgagatatttataagcattttttttcctt--aaaaaaacatttagatgatgaatttatgggaattaatgttg |
35045538 |
T |
|
| Q |
413 |
tcaaagacaaaaaccaagagaaatgtaagcaatgacgatnnnnnnnngagtagtgttgaatagtacaagacgaaagccaacccccgtatatatataaccg |
512 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35045539 |
tcaaagacaaaaaccaggagaaatgtaagcaatgacgataaaaaaaagactagtgctgaatagtatgagacgaaagccaacccccgtatatatataaccg |
35045638 |
T |
|
| Q |
513 |
tacaatgtgtagtggatttatttttgaagggtg |
545 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
35045639 |
tacaatgtgtagtggatttatttttgaagggtg |
35045671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University